Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03324 ATGGTTTGTGAGATGGAGAGTGACTGTATTGAGGTTGAGGACATGGAGATTGAAGTCCTCCCTTCAATGTGGCCTGAAGATGTTGGCACTGATGTTGGAAAGCAGTTTAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAGGTTACAATCTTAGAGGAGCCAACTATAGCTGATTTTCAGCGTCTCATGGAGCTTACAAATTATACAGATAAAGGGTCTTCTCAGTTGGCTTATCTTATGAAACATTGGGAGTATAAGCAGGCCAATGCTGTGCGTCTTCTCAGGGAAGAGCTTGATAACCTTAGCAAGCAAAGGCAGGAAGTTGAGCTTAGAAAATTGGAGATACTGAAAGATAATCGATTTGAGGAGGAAAATTATGGGGGTGATAAACGCCCTGTTTCTATATTGGATGAAGTTTACTATACATGGCAAGATGTACCTGTACCACTGAGGAAAAGTGATGTTGTTGTTCAAAGCAAGAGAGTTGAAATTGATGCTGAGTATGATACTGTTGTGTACTGGAAACAGCGGGCTATGGATTTTGAAAGACAGTTGGAGGCAAGTATTCAGAGAGAGCAGATACTTGTGGAAAAGTTGCAAGAAAGTATAAAGAATTTTGAAAGGCAGTCATCACCTGTGGAAGAACTCTCACAGATTCTGAAGAGGGCTGATAATTTCTTACATTTTATACTTCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTACCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATTATAGGAAAAACGGATGTTGAAATTTTCACAGGATCTGGTGTTAAGGAATCTCAAGATTTTAAGAGAGAAGTGATGGAGAAAGGAATACCTGCAAAAAAGGAAATTACTTTTGAGACAGAATTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAGCTGAGGGAAGAGATTGCAGTTCAGAAAGCCAAGGAAACTGAACTTAATAAGACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGCTATGAAATTGGAAGCTACCAAATTCCGACCAAGAGAGGTTGTAAAACATGTTCTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACCTTAGAAGGAAATGTGGCAGATGATATACCAATTGAGGTCACTGGAGATGTTTTAAGGATCCGGCAGATTCTCACAAATTTAGTCAGCAATGCGGTCAAGTTTACACATCAAGGCAAAGTTGGTATAAACCTTTACGTTGTTCCAGAACCACCTTTTGCTAAAGCAGAAGAAGGCCATCAAAAGATGACCACTGACCAGTCAACTATTGTAGCCAATGGGGTGAAGGAAGATAAACACCAGTTAACACCTCGAAGTAGATGTGATCAAAATCTTGATGGTAAAAATCACAATGATCATATTCCCACCCAAAATCACGCATTCAATGATGAATGTAGATCTTCAGTTAACAGTGAATGCTCAACAAATGGAGATACTGATGAGGGAACTCATTCAACTGAAACAACAGTGTGGATACGTTGTGATGTATATGATACAGGAATTGGAATACCAGAAAAGGCTATACCAACTTTATTCAGAAGATACATGCAAGTCAGTGCAGACCACGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTAATGGGTGGTCGTCTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACCTTCATACTTCCATACAAGGTTTCAACCACTTGTGATAATTCTGATGACCCTGATGAGCTTTCAGATGTGGATAATAATGAAGATGATACAACAGAGGGCTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTGTTCTCTTCTAATGGATCTAGCAGGCCCCAAAATTTATTACCAGGCTACAGAAGCTCACATAAGTTTAATGGGTTTTCAGAGAATTCTTACTCATTCCCCTCTACTAACATAGGATCAAAAGGGACAAATTCAGTTGAGGATGCATCTTCAGCTATTGTTGATGCTCCAGAGATGTCTGAATCAACAAGTTCATCATGTTACAGCCCAGAAACAAAGGATGAAATTTTAGTTAATAGAAACAAACAAAACCAAGATAAGGCACATGCTCGGTTACAGAATGGTAGTGTAGATTCTTGTCAACTTAAGGAGGCAAGTAGAGAAATGAATGAAGCAACAACGTTAAGTGAACCGATGCAAACATGTCAGGGTCAAGGGAAGGCAGACATAACTTCTCAATGTGTTATTAGCAGTAGTAGCTCTTCAACAGAAGTCACAAAATCAACATTAAAGCCAAAGATTCTTCTTGTTGAAGATAACAAAATCAATGTCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAGCATGGATGTTGTGAATAATGGAGTGGAAGCCTTACGTGCAGTTCAGCGCCATACTTATGATGTCATTCTGATGGATGTTTTTATGCCAGTTATGAATGGTCTTCAAACAACAAAATTGATTCGGTCTTATGAGGAAACGGGCAATTGGGATGCTGCAAGAAAATCTGGAATTGAACTAAGTTTATCAGCATCAGAGGAATGTTCTGTAGCACCTAAAAAACGGATCCACATTATCGCGATGACAGCAAATACAATGCCAGAGAGTGCTGAAGAATGTTTTGCAAATGGAATGGATTCATTTGTGTCAAAACCTGTGACTTTCCAAAAATTGAAAGATTGTCTGGAACAGTACCTAAGGTGA 3054 0.3962 MVCEMESDCIEVEDMEIEVLPSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTDKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQEVELRKLEILKDNRFEEENYGGDKRPVSILDEVYYTWQDVPVPLRKSDVVVQSKRVEIDAEYDTVVYWKQRAMDFERQLEASIQREQILVEKLQESIKNFERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGIPAKKEITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKAEEGHQKMTTDQSTIVANGVKEDKHQLTPRSRCDQNLDGKNHNDHIPTQNHAFNDECRSSVNSECSTNGDTDEGTHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVDNNEDDTTEGFFQFQPRTLGSLFSSNGSSRPQNLLPGYRSSHKFNGFSENSYSFPSTNIGSKGTNSVEDASSAIVDAPEMSESTSSSCYSPETKDEILVNRNKQNQDKAHARLQNGSVDSCQLKEASREMNEATTLSEPMQTCQGQGKADITSQCVISSSSSSTEVTKSTLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEALRAVQRHTYDVILMDVFMPVMNGLQTTKLIRSYEETGNWDAARKSGIELSLSASEECSVAPKKRIHIIAMTANTMPESAEECFANGMDSFVSKPVTFQKLKDCLEQYLR. 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03324 1017 Coils Coil 185 212 - -
Seca7g03324 1017 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Seca7g03324 1017 FunFam Histidine kinase 5 217 352 - -
Seca7g03324 1017 Coils Coil 346 366 - -
Seca7g03324 1017 PRINTS Bacterial sensor protein C-terminal signature 668 681 IPR004358 GO:0016310|GO:0016772
Seca7g03324 1017 PRINTS Bacterial sensor protein C-terminal signature 609 623 IPR004358 GO:0016310|GO:0016772
Seca7g03324 1017 PRINTS Bacterial sensor protein C-terminal signature 644 662 IPR004358 GO:0016310|GO:0016772
Seca7g03324 1017 SMART HKATPase_4 486 684 IPR003594 -
Seca7g03324 1017 Coils Coil 94 121 - -
Seca7g03324 1017 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 17 1016 - -
Seca7g03324 1017 FunFam Probable histidine kinase 1 566 687 - -
Seca7g03324 1017 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Seca7g03324 1017 ProSiteProfiles Histidine kinase domain profile. 382 684 IPR005467 -
Seca7g03324 1017 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 429 683 IPR036890 -
Seca7g03324 1017 CDD HATPase_EvgS-ArcB-TorS-like 491 681 - -
Seca7g03324 1017 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Seca7g03324 1017 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 682 IPR003594 -
Seca7g03324 1017 FunFam Putative histidine kinase 5 363 440 - -
Seca7g03324 1017 ProSiteProfiles Response regulatory domain profile. 874 1016 IPR001789 GO:0000160
Seca7g03324 1017 CDD REC_hyHK_CKI1_RcsC-like 875 1012 - -
Seca7g03324 1017 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Seca7g03324 1017 FunFam Histidine kinase 5 867 1017 - -
Seca7g03324 1017 Gene3D - 441 689 IPR036890 -
Seca7g03324 1017 Gene3D PAS domain 217 352 - -
Seca7g03324 1017 SUPERFAMILY CheY-like 873 1017 IPR011006 -
Seca7g03324 1017 SMART REC_2 873 1012 IPR001789 GO:0000160
Seca7g03324 1017 Pfam Response regulator receiver domain 875 943 IPR001789 GO:0000160
Seca7g03324 1017 Gene3D - 363 440 - -
Seca7g03324 1017 Gene3D - 867 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03324 Seca-Chr7 97751265 97759096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03324 1 1016 Histidine Kinase Gene Family AT5G10720 56.589 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca7g03324 HATPase_c 6.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03324 - - gmx:100801640 1749.56