Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03316 ATGGCCTCCAAGTTATGCGATTCCTGCAAATCAGCGACAGCCACCTTGTTCTGCCGCCCTGACTCTGCCTTCCTCTGTCTCCCCTGCGACGCCAAAATCCACGCCGCCAACAAGCTCGCCTCCCGCCACCCTCGCGTCTCCCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTCACGTCACCTGCAAGGCCGACGCTGCCGCCCTCTGCCTCTCCTGCGACCACGACATCCACTCCGCCAACCCCCTCGCCCGCCGCCATGAACGCGTCCCTGTCACCCCCTTCTACCACCACCACCCCTCCGTTAACGACCACCACCCTTACTTCTCTGACCCTGACCATGCTGATGCTGACGTCACCACTGATGAAGCCGAAGCCGCTTCCTGGCTCCTTCCTACACCTTCCAACCCTAAAGGCCCCGATCTCAACTCCGCTTGTCACTACTCCTTCCCTGAAATCGACCTCGACTTCGTCTCCGTCGATCCCAAAATGGAATCGCCGGACCATAACAGCACCGCCACCGCCGACGGAGTCGTTCCGGTGCAATCTCAGAGCAAGACCACCACCACTGAACACTACTACGACAACATCGATTTCCCTACTTCCAAGCCTTTTGCTTACGATTACAACGCCAAGTCGCAGCAGTGCGTATCATCTCCGTCGATGGAAGTTGGCGTTGTGCCGGACGGGAACGCGATGTCGGATATATCGTACTGCTGCTACAGCAAGGCGGCGACGGAGGCGGTGCAGATCTCGGCGGCGGATAGGGAAGCTAGGGTTTTGAGGTACAGGGAGAAGAGGAAGAATAGAAGGTTCGAAAAGACCATTCGTTACGCTTCTAGGAAAGCGTATGCAGAAACCAGACCCAGGATCAAAGGCAGGTTCGCCAAGCGCACTGATGCGAACTTACTCGCCGAAGAGGATCCGTTTTCTGGATACGGCGTCGTTCCCACCTGTTTGTAG 960 0.5792 MASKLCDSCKSATATLFCRPDSAFLCLPCDAKIHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLSCDHDIHSANPLARRHERVPVTPFYHHHPSVNDHHPYFSDPDHADADVTTDEAEAASWLLPTPSNPKGPDLNSACHYSFPEIDLDFVSVDPKMESPDHNSTATADGVVPVQSQSKTTTTEHYYDNIDFPTSKPFAYDYNAKSQQCVSSPSMEVGVVPDGNAMSDISYCCYSKAATEAVQISAADREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRTDANLLAEEDPFSGYGVVPTCL. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03316 319 CDD Bbox1_BBX-like 5 48 - -
Seca7g03316 319 ProSiteProfiles CCT domain profile. 255 297 IPR010402 GO:0005515
Seca7g03316 319 SMART bboxneu5 49 91 IPR000315 GO:0008270
Seca7g03316 319 SMART bboxneu5 1 48 IPR000315 GO:0008270
Seca7g03316 319 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Seca7g03316 319 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Seca7g03316 319 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Seca7g03316 319 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 304 IPR045281 GO:0009909
Seca7g03316 319 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Seca7g03316 319 Pfam CCT motif 255 297 IPR010402 GO:0005515
Seca7g03316 319 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03316 Seca-Chr7 97306656 97307729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03316 1 317 C2C2-CO-like Transcription Factor Family AT5G24930 55.435 3.25e-111 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca7g03316 zf-B_box 8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03316 - - cam:101512206 473.396