Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03307 ATGTTTGACTCAAGCGTGATGGATTCTCAGCCACAACAAGAGCAAGAGCAAGAGCAACAAAAACAACAACAGGTTGTTGATATGTCAGCTAACAAGAATTCTGCAGAAATTTGGTCGGGAAGGAACAAAGGGAAAGAAGTTGCGAGTGACATCATAGAAGTTCCTCCTTCCACTGACGCTGACGAGGCCCAAGAGGATCCCGATTCAGGCAAGAGGAAGCGGTACCACTGCCACTCTCAACACCGGATACACCATATGGAAATGTTCTTTAAGGAGTGCCCTCACCCATATGATAAGCAAAGGAAAGCCCTGGGCGATGAGCTTGGGCTCGACCCTTTGCAAATCATGTTTTGGTCCAAAACAAGCGCTCAACAAAAACGCCATGAGAATGCTCTTCTGAAGGGTGAGAACGAAAAGCTTCGTGCTGACAATGCTAGGTACAAGGAGGCACCGAATCATGCTACATGCCCTACCTATTGA 480 0.4729 MFDSSVMDSQPQQEQEQEQQKQQQVVDMSANKNSAEIWSGRNKGKEVASDIIEVPPSTDADEAQEDPDSGKRKRYHCHSQHRIHHMEMFFKECPHPYDKQRKALGDELGLDPLQIMFWSKTSAQQKRHENALLKGENEKLRADNARYKEAPNHATCPTY. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03307 159 CDD homeodomain 72 129 IPR001356 GO:0003677
Seca7g03307 159 Gene3D - 57 148 - -
Seca7g03307 159 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Seca7g03307 159 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 68 158 IPR042160 -
Seca7g03307 159 MobiDBLite consensus disorder prediction 1 38 - -
Seca7g03307 159 SMART HOX_1 70 132 IPR001356 GO:0003677
Seca7g03307 159 SUPERFAMILY Homeodomain-like 66 118 IPR009057 -
Seca7g03307 159 MobiDBLite consensus disorder prediction 1 78 - -
Seca7g03307 159 Pfam Homeodomain 72 118 IPR001356 GO:0003677
Seca7g03307 159 Coils Coil 123 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03307 Seca-Chr7 97046325 97047026 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03307 53 157 Homeobox Transcription Factor Family AT4G21750 52.679 4.15e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca7g03307 Homeodomain 7.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03307 K09338 - dcr:108204937 133.65