Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03300 ATGTCAGCTTACAAGAATTTTGTAGAAAATGGGTCGGGAAGGAACAAAGGGAAAGAAGTTGCGAACGACAACATGGAAGTTCCTCCTGCCGTTGATGCTAATGAGGCCGAAAAGGATCCCGATTCAGGCAAGAGAAAGCGGTACCACCGCCATTCTCAGCACCAGATACAACATATGGAAATATTCTTCAAGGAGTGCCCTCACCCAAATGATAAGCAAAGGAAAGCCTTAGGCGATGAGCTTGGGCTCGACCCTTTGCAAATCAAGTTTTGGTTCCAGAACAAGCGTACCCAAATGAAGGCTCAACAAAAACGCCATGAGAATGCTCTTCTGAAGGGTGAGAACGAAAAGCTTCGTGCTGACAATGCTAGGTACAAGGAGGCACTGAGTCATGCTACATGCCCTACCTTTGGAGGGCCCTCTGTTGGTGAAATTTCCTTTGACGAACAACACTAG 456 0.4693 MSAYKNFVENGSGRNKGKEVANDNMEVPPAVDANEAEKDPDSGKRKRYHRHSQHQIQHMEIFFKECPHPNDKQRKALGDELGLDPLQIKFWFQNKRTQMKAQQKRHENALLKGENEKLRADNARYKEALSHATCPTFGGPSVGEISFDEQH. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03300 151 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 42 151 IPR042160 -
Seca7g03300 151 FunFam Homeobox-leucine zipper protein HDG1 31 118 - -
Seca7g03300 151 MobiDBLite consensus disorder prediction 1 54 - -
Seca7g03300 151 SMART HOX_1 43 106 IPR001356 GO:0003677
Seca7g03300 151 Pfam Homeodomain 45 100 IPR001356 GO:0003677
Seca7g03300 151 Coils Coil 101 128 - -
Seca7g03300 151 MobiDBLite consensus disorder prediction 32 46 - -
Seca7g03300 151 CDD homeodomain 45 103 IPR001356 GO:0003677
Seca7g03300 151 Gene3D - 31 118 - -
Seca7g03300 151 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Seca7g03300 151 SUPERFAMILY Homeodomain-like 39 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03300 Seca-Chr7 96853588 96854245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03300 17 151 Homeobox Transcription Factor Family AT4G04890 62.500 6.34e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca7g03300 Homeodomain 6.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03300 K09338 - apan:127249802 190.66