Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03299 TGTTTTGTTTTATTTAACTCTTCTATTGTTGTTGTTGTTAGGTTTTTCAAGGAGTGCCCTCACCCATATGATAAGCAAAGGAAAGCCTTTGGCGATGAGCTTGGGCTCAACCCTTTGCAAATTAAGTTTTGGTTCCATAACAAGCGTACCCAAATGAAGGCTAAACAAGAATGCCATGAGAATGCTCTTCTGAAGGGTGAGAACGAAAAGCTTCGTGCTGACAATGTTAGGTACAAGGAGGCACTGAGTCATGCTACATGCCCTACCTGTGGAGGGCCCTCTGTTGGTGAAATTTCCTTTGACGAACAACCCTAG 315 0.4349 CFVLFNSSIVVVVRFFKECPHPYDKQRKAFGDELGLNPLQIKFWFHNKRTQMKAKQECHENALLKGENEKLRADNVRYKEALSHATCPTCGGPSVGEISFDEQP. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03299 104 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 103 IPR042160 -
Seca7g03299 104 CDD homeodomain 14 56 IPR001356 GO:0003677
Seca7g03299 104 SUPERFAMILY Homeodomain-like 11 58 IPR009057 -
Seca7g03299 104 Coils Coil 61 81 - -
Seca7g03299 104 Gene3D - 6 71 - -
Seca7g03299 104 ProSiteProfiles 'Homeobox' domain profile. 14 55 IPR001356 GO:0003677
Seca7g03299 104 SMART HOX_1 7 59 IPR001356 GO:0003677
Seca7g03299 104 Pfam Homeodomain 14 53 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03299 Seca-Chr7 96757341 96757765 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03299 15 103 Homeobox Transcription Factor Family AT4G21750 72.222 1.37e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca7g03299 Homeodomain 2.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03299 K09338 - cpap:110806758 147.902