Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03271 ATGGAGGAGATGAAGGCGAACATTCTATTTGGCAAGTATGAGATGGGAAGGCTCCTAGGCAAAGGAACATTCGCGAAGGTGTACTACGGCAAAGAAATTGCAACAGGTGAAGGAGTAGCAATCAAAGTGATCAGCAAAGACAAAGTGAGAAAAGAAGGTATGATGGAGCAAATAAAACGCGAGATATCAGTTATGCGGTTAGTGAGGCACCCAAACATCGTGAACCTGAAAGAAGTTATGGCCACAAAGACCAAAATCCTGTTCGTGATGGAGTACATACGTGGCGGCGAGCTATTCGCCAAGGTGGAAAAGGGAAAACTCAGCGAAGATCTCACCCGCAAGTATTTCCAACAATTAATCAGCGCCGTTGATTACTGTCACAGCAGAGGAGTCTCTCACCGCGATCTCAAGCCAGAAAATCTGTTACTCGATGAGAACGGGAATCTCAAAGTCTCTGATTTTGGCCTCTCTGCTTTACCAGAACAGCTTAGGCAAGACGGGCTTCTCCACACGCAGTGTGGGACCCCAGCATACGTTGCCCCTGAAGTGTTGAGAAAAAGAGGATACGATGGATTCAAAGCTGATACATGGTCTTGTGGTGTTATTCTATATGCTTTGCTTGCAGGATTCCTTCCCTTCAGGCACGAGAATCTCATGACTATGTATAACAAGGTTTTGAAAGCAGAGTATCAGTTTCCTCCATGGTTTTCACCAGAATCAAAGAGGTTGATCTCGAAGATTCTAGTAGCTGATCCACAGAGACGAATCACAATCCCTTCAATCATGAGTGTTGCGTGGTTCCAGAAAGGGTTCATAACTACTCCAATTGATTCACAAGAACCAACAACAACAACAACGGTTTCTTCAGATACACTCGAGCCGAAATTCTTCAACGCTTTTGAGTTCATTTCCTCGATGTCTTCCGGGTTCGATCTTTCGGGTTTGTTTGAGGAAAAGAGGAAAAAAGGCTCGGTGTTCACTTCAAAGTGTTCGGCTATGGAGATTGCGTCGAAGATTGAAGGTGCGGCGAAAGGGTTGAGTTTCAAGGTGGCGAAGTTGAAGGACTTCAAGCTGAGGTTGCAAGGGAACTCGGTGGGAAGAAAAGGGATGTTGGCCGTCACGGCGGAGATATCGGAGGTGGCGCCGGAACTGGCGGTGGTGGAGTTTTCGAAGTGCTCCGGCGACACGTTGGAATATGTGAAGTTTTGTGAAGAGGATGTTAGACCGGCGCTGAAAGACATTGTGTGGACGTGGCAGGGTGAGTAA 1266 0.4676 MEEMKANILFGKYEMGRLLGKGTFAKVYYGKEIATGEGVAIKVISKDKVRKEGMMEQIKREISVMRLVRHPNIVNLKEVMATKTKILFVMEYIRGGELFAKVEKGKLSEDLTRKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVLRKRGYDGFKADTWSCGVILYALLAGFLPFRHENLMTMYNKVLKAEYQFPPWFSPESKRLISKILVADPQRRITIPSIMSVAWFQKGFITTPIDSQEPTTTTTVSSDTLEPKFFNAFEFISSMSSGFDLSGLFEEKRKKGSVFTSKCSAMEIASKIEGAAKGLSFKVAKLKDFKLRLQGNSVGRKGMLAVTAEISEVAPELAVVEFSKCSGDTLEYVKFCEEDVRPALKDIVWTWQGE. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03271 421 SUPERFAMILY Protein kinase-like (PK-like) 9 306 IPR011009 -
Seca7g03271 421 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Seca7g03271 421 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 412 - -
Seca7g03271 421 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03271 421 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03271 421 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Seca7g03271 421 CDD CIPK_C 298 412 - -
Seca7g03271 421 Pfam NAF domain 294 352 IPR004041 GO:0007165
Seca7g03271 421 FunFam Non-specific serine/threonine protein kinase 6 298 - -
Seca7g03271 421 FunFam Non-specific serine/threonine protein kinase 292 416 - -
Seca7g03271 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Seca7g03271 421 Gene3D Kinase associated domain 1, KA1 292 417 - -
Seca7g03271 421 CDD STKc_SnRK3 12 266 - -
Seca7g03271 421 Gene3D Transferase(Phosphotransferase) domain 1 93 272 - -
Seca7g03271 421 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g03271 421 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Seca7g03271 421 ProSiteProfiles NAF domain profile. 292 317 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03271 Seca-Chr7 96089652 96090953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03271 2 421 CBL-interacting serine-threonine protein kinases AT5G25110 68.276 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca7g03271 Pkinase 9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03271 - - gmx:100780478 670.618