Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03262 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAACCCCCCGATGGGCTTCTAGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATGTGATGGAAGAAGATGAATATAAAGTGTATATAGGGGGAATAATTGCGCAACTTCGTGATTATTTCCCTGATGCTTCATTTATGGTGTTCAACATGCGGGAGGGAGAAAACCAAAGCCAGATATCAAACATTTTGTGTGACTATGATATGACTGTGATGGACTATCCTCGACAGTATGAAGGTTGCCCGTTACTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTCAACTTGGGCAACAAAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCAGTTTTGGCATTTATGCTGGCCGCTCTCTTGATTTATAGGAAGATGTTTACAGGGGAGCAGAAAACTCTAGACATGATATACAAGCAAGCTCCTCGGGAATTTTTGCAGTTGATGTCACCATTGAATCCAATACCTTCACAGTTGAGGTATCTTCAGTACATATCAAGGAGAAATGTTGGTTCAGAATGGCCTCCTCTAGATAGGGCACTTACATTGGACTGTGTAATCATGAGACTCATTCCTAACATGGATGGAGAAGGTGGTTGCCGTCCTATATTTAGGATATATGGACAGGACCCTTTTATTCCTGCTGATCGGACTCCCAAAGTTCTCTTTTCAACTCCAAAAAGGAGCAAACTTGTTCGGCAGTACAAGCAGGCTGATTGTGAACTAGTTAAGATTGACATCCATTGTCATGTTCAAGGTGATGTTGTTCTTGAGTGTATTAGTTTGGACAGTGATTTGGAACGCGAACAAATGATGTTCCGGGTGATGTTCAATACAGCATTTATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATGTTATGGAATGCCAAAGATCACTTCCCTAAAAGTTTTAGAGTAGAGGTTCTTTTCTCGGAAATGGATGCTTCATCTTCTGTTATTTCAATTGATCTGCCTCGTATTGAGGAGAAAGAAGGCCTACCTGTTGAGGCTTTTGCAAAGGTTAAGGAAATTTTCAGCCATGTTGATTGGCTAGATTCAAAACCAGAGGTAGCAAATGTGCTCCAACAGATCACAGCATCAAATATCCTTCTGGAAAGGTTGGACAGTGGGGTTTCTGCATCACCGAGCAGCTTACTAAAGGAGTCATTGTCTGGAAGATTTAAATTTGATTCAAAGTCACAAAATGATACAAACAGTCCGACTTCTGCAGTTCAGGGGAGACTTTCTTTGTCCTCATTGGAAGATTCTAGGGATGCTCCTATAGAGAAGAAGATAGAACCATTAGAATCAAAGACACTGTCAGAAAACAACAACAACACACTTGCATCTTTAGGTCAGGAGAACCATCCTATTCCTTTGTTTGGGCTCTCAACTGATTCAGATTCTTCTAAACAGGAGACCAGATCATTAGAATCAAAACAATCATTGAAAAATGATACCGAATTTCCTACTTCTATGGATCAGGAGAAACAATCTATCCCCTTAATTGAACCATCTATGGATGCAGATTCAATTGAAAAGAAGATTGGGTCATTGGAATATGAGGAAAATGATATTGAATCATTAGCATCAAAGGTAATGTTGGAAAATGAAACCGAGTTTCCTACATCCATATCTCAAAGGGAACAATCTATTCACTTAATGGAACCGTCCACTGATGCAAATTCAATGAAAAAGGAGATTGGACTGTTAGGATCAAAGGAAAAGGAGATTGAATCGTTAGACTCAGAGGCATTGTCTGAAAAAGATAGAAGATTTAAATTTGAACCGAAGTTTCTGCCAGAAATTGCTGTAAGAATCCCGACTCCTGCAGTTCAAGAGAAACCTTCTATGTCCTCATTTGAACCATCTGGGGATGCTCCTATGGAAACGAAGAAAGAACCTTTAGAATCGAAGGCATCAGCAGAAGGTAACATCAAGACTCTTGCACCCATGGGTCAGGGGAAACAACCCATTCCCTCACTTGGACTCTCAACAGATTCACATTCTGCTACAATGCAGATTGAATCATTAGAATCAAAGGCATTGGTGGAAAATGATACTGAGGTTTCTACATCTATGGCTCAGGGGAAACAGTCTATTCCCTTAACTGAACCATCCATGTATGCAAATTCAATGAAACATAAGATGGGGCAATTAGAGTCAAAGGGAAAGGATATTGAATCATTAGAATCAAAGTCATTGATAGGAAATGATGCCAAATATCCTCCATCTATGCCTCAGGGGAAACAATCAATTCCGTTAATTCAACCATCCACGGATGCAAATTCAATAAAAAAGAAGATTGGACAATCAGAATCAACGGTGTTGTCAGAAAATGATATCAAGAGTCTCACATCCACAGTTCAAAGGAAACAAAATAGTCCCTTAATTGAACCGTTCATTGATGCAAACTCAATTAAAAAGAAGATCGAACCTCAAGAATTGCAGGTTGCTCTTCAGCTACCCACCCAATCTAAAATAATTTCTCCACGGGTGCGTCAACCTATTCGATCTGCTCCAGCTTCTTATTCTAACTCCTTGCAAGGTTCGCCTGTAGCTATCTCAAGATATCATAGTGCACCATCGGCTCTTGGAATAACAACTGTGTTGCAGGATCATACACCAATGGATATCAAAGAAGAAGTCACTCCTGCAGTGACAATATCTTCTGCTTCTTGGCCTTCTTCAAAATCAAAGGTGCCAAAATCCATAGAGCCTAGTTCTACAAGTGTTCCTCCAACATCATCATCAACATTGCTTTCATCTATGCCATTAAAATCTTCAGTGGATGCTGTTGTTGCCATGGAGAAAACTTTTGGACCCCTTGCTCCTGCTCCTCCAACTCCACCTTCTCAATGTGAGCCTACTTTAAAATTGATGCAACCTATTGTTACACAGAACCCTGAAAATACAATACCTTCTCAATGTGAGCCTACTTCAAAATTGATGCAACCTATTGTTACACAGAACCCTGAAAATACAATGCATGATAAAGATCAGAAATCATTGGTTACTCCTTCTCCTCCCCCTCCTCCTCCCCCTCCTCAACATGAGGCTACTTCAAAATCGGGGCAATCTATTGTTACACAGAACCCTGAACATACAATGCATGATAAAAAATCATTGGTTACTCCTCCTCCTCCTCCTCTTCCCCCTCCACCTCCACCTCTACCTCCTCAATGTGAGCCTCCTTCAAAATTGATTCAATCTATTGTTACTCAGAACCCTGAAACTACAATGCATGATAAAGGTCAGAAATCATTGGCTACTCCTCCTCCTCCTCCCCCTCCTCCTCCACCCCTTCCTTTTGAGCCTATCCAAAGCTCTCTTTCACAGCCTTTTCCTCCAACCCCAGGTCTTTCTTCTCCATCTTCTGCCAAGAAGAGCTCATCTTTATCCCATCCACCACCCTCATTTAAAGGTCCTCCTCCCCCACCTCCACCTCCATCTTCAACTGGACAGACTTCATCATCTTCAATACCACCTCCTCCTCCTCCACTGTCTGGGTTTCCTTCTTCAGCTACCTGTCCTTTTTCTTCTCCATTGAGTATGAACAAGTCTGCTGTTATGGCTGGTCCTCCTCCCCCACCTCCACCTCCTGGACATTCTGGCACTGCACCTGCCTCTACTTCTACACCATTAGTGCCACCTCCACCCCCTCCTCCTGCTTCTGCATCCCAAAATTCTCTGTCTAATAACTCTGCAAATGTTCCACCTGTACCCCCACCTCCTGCCCCTTCTGCCAATGGATTAACAAACTCTGGCGCTGCTTCCCAGCATGTGCCTCCAATTCCTGGACCACCTTCAGCTCCATTTGGTGCGAAAGGACGTGGCCTATTGCGAGCTAATCCAAAAGGTCTGTCTCAGACTAAAAGGAGCAATCTTAAACCTTACCATTGGTTAAAATTAACAAGGGCCATGCAAGGAAGCCTATGGGCTGAGACACAGAAACTTGATGAAGCTTCTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAGACTCTTTTCTCTGCAGCTGCTCCAAATTCTGATCGTGAAAAAGGAGGAAAATCAAATCGTCGTGCCTCAGGGAATAAACCTGACAAAGTTCAATTGATTGAGCTCAGACGGGCGTATAACTGTGAGATCATGCTTACAAAAGTCAAAATCCCTTTGCCTGATTTAATGAGTGCTGTGCTTGCAATGGACGATTCAGTATTAGATTCTGATCAAGTTGAGAACCTCATAAAGTTCAGTCCAACCAAAGAAGAGATAGAACTGCTCAAGGGATATAATGGAGATAAGGACAACTTGGGAAAGTGCGAACAGTTCTTCATAGAATTAATGAAGGTTCCAAGAGTAGAAAGCAAGCTAAGAGTTTTCTCTTTTAAGATACAATTCTCCTCCCAGGTTTCAGAGCTCAGAAGGGACTTGAATATTGTAAATTCTGCATCTGAAGAGATCAGGAATTCAGTCAGGTTGAAAAGAATCATGCAGACCATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTTCTGCTGTTGGGTTCCGATTGGATAGTCTCCTTAAACTCACTGATACACGAGCCCGAAACAACAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTTGCTGAAAAGCTTCCAGAACTTTTAGCTTTCCCCAAAGACCTAGTGAGTTTGGAGGCTTCAACCAAGGTATCTTGTTTATTCTAA 4785 0.419 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDVMEEDEYKVYIGGIIAQLRDYFPDASFMVFNMREGENQSQISNILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGQQNVVLMHCERGGWPVLAFMLAALLIYRKMFTGEQKTLDMIYKQAPREFLQLMSPLNPIPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIMRLIPNMDGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRQYKQADCELVKIDIHCHVQGDVVLECISLDSDLEREQMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDHFPKSFRVEVLFSEMDASSSVISIDLPRIEEKEGLPVEAFAKVKEIFSHVDWLDSKPEVANVLQQITASNILLERLDSGVSASPSSLLKESLSGRFKFDSKSQNDTNSPTSAVQGRLSLSSLEDSRDAPIEKKIEPLESKTLSENNNNTLASLGQENHPIPLFGLSTDSDSSKQETRSLESKQSLKNDTEFPTSMDQEKQSIPLIEPSMDADSIEKKIGSLEYEENDIESLASKVMLENETEFPTSISQREQSIHLMEPSTDANSMKKEIGLLGSKEKEIESLDSEALSEKDRRFKFEPKFLPEIAVRIPTPAVQEKPSMSSFEPSGDAPMETKKEPLESKASAEGNIKTLAPMGQGKQPIPSLGLSTDSHSATMQIESLESKALVENDTEVSTSMAQGKQSIPLTEPSMYANSMKHKMGQLESKGKDIESLESKSLIGNDAKYPPSMPQGKQSIPLIQPSTDANSIKKKIGQSESTVLSENDIKSLTSTVQRKQNSPLIEPFIDANSIKKKIEPQELQVALQLPTQSKIISPRVRQPIRSAPASYSNSLQGSPVAISRYHSAPSALGITTVLQDHTPMDIKEEVTPAVTISSASWPSSKSKVPKSIEPSSTSVPPTSSSTLLSSMPLKSSVDAVVAMEKTFGPLAPAPPTPPSQCEPTLKLMQPIVTQNPENTIPSQCEPTSKLMQPIVTQNPENTMHDKDQKSLVTPSPPPPPPPPQHEATSKSGQSIVTQNPEHTMHDKKSLVTPPPPPLPPPPPPLPPQCEPPSKLIQSIVTQNPETTMHDKGQKSLATPPPPPPPPPPLPFEPIQSSLSQPFPPTPGLSSPSSAKKSSSLSHPPPSFKGPPPPPPPPSSTGQTSSSSIPPPPPPLSGFPSSATCPFSSPLSMNKSAVMAGPPPPPPPPGHSGTAPASTSTPLVPPPPPPPASASQNSLSNNSANVPPVPPPPAPSANGLTNSGAASQHVPPIPGPPSAPFGAKGRGLLRANPKGLSQTKRSNLKPYHWLKLTRAMQGSLWAETQKLDEASRAPEFDMSELETLFSAAAPNSDREKGGKSNRRASGNKPDKVQLIELRRAYNCEIMLTKVKIPLPDLMSAVLAMDDSVLDSDQVENLIKFSPTKEEIELLKGYNGDKDNLGKCEQFFIELMKVPRVESKLRVFSFKIQFSSQVSELRRDLNIVNSASEEIRNSVRLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLAFPKDLVSLEASTKVSCLF. 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03262 1594 Gene3D - 196 341 - -
Seca7g03262 1594 SMART it6_source 1114 1594 IPR015425 -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 565 589 - -
Seca7g03262 1594 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1324 1591 - -
Seca7g03262 1594 Gene3D Formin, FH2 domain 1308 1593 IPR042201 -
Seca7g03262 1594 SMART PTEN_C2_2 197 337 IPR014020 -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1092 1111 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1114 1146 - -
Seca7g03262 1594 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1310 1594 IPR015425 -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 448 462 - -
Seca7g03262 1594 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Seca7g03262 1594 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Seca7g03262 1594 PANTHER FORMIN-J 1 1591 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 421 521 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 761 781 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 710 730 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1237 1251 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1362 1386 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 913 948 - -
Seca7g03262 1594 PRINTS Proline rich extensin signature 1024 1041 - -
Seca7g03262 1594 PRINTS Proline rich extensin signature 1112 1124 - -
Seca7g03262 1594 PRINTS Proline rich extensin signature 1004 1020 - -
Seca7g03262 1594 PRINTS Proline rich extensin signature 1069 1094 - -
Seca7g03262 1594 PRINTS Proline rich extensin signature 976 997 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1216 1230 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1147 1161 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 635 695 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1030 1044 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1014 1319 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1162 1197 - -
Seca7g03262 1594 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1068 1089 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 463 478 - -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 565 583 - -
Seca7g03262 1594 Pfam Formin Homology 2 Domain 1315 1591 IPR015425 -
Seca7g03262 1594 Pfam C2 domain of PTEN tumour-suppressor protein 200 337 IPR014020 -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 421 444 - -
Seca7g03262 1594 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Seca7g03262 1594 MobiDBLite consensus disorder prediction 1198 1212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03262 Seca-Chr7 95748205 95758587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03262 792 899 FH2 protein (formin) Gene Family AT2G25050 37.838 1.16e-11 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03262 - - lja:Lj5g3v0483820.1 1882.84