Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03261 ATGACTCGCACACTGATCAGAACCCTCCAATCCACAAACGACACTGCCACGGCGCCAGCGCCGGAGGCCGCTTCCGTTGAATCAAACTCCGTCGTCATCCTCGCAACGCTCCTCTGCGCCCTCGTATGCCTTGTCGGCCTAACCGCCATCGCCCGCTGCGCCTGGCTCCGCCGTATCCCCATCGCCGGCGCCGGAAACTCGCCGAGACAGACAGTCGCCAACAAGGGCCTCAAGAAGAAGGTGCTCAACTCGCTGCCAAAATTCACCTATGTCGACGGCAGCCCAGGCGGCAAGTGGGTGGCCACGTCGGAGTGCGCCATTTGCCTGTTGGAGTTCGCCGCCGGCGACGAGGTTCGGGTGCTGCCACAGTGCGGTCACGGCTTCCACGTTGCCTGCATAGACACATGGCTTGGGTCCCACTCTTCGTGTCCTTCTTGCCGCGCTCCCTTCGCCGTTGCCAGGTGCTAG 468 0.6325 MTRTLIRTLQSTNDTATAPAPEAASVESNSVVILATLLCALVCLVGLTAIARCAWLRRIPIAGAGNSPRQTVANKGLKKKVLNSLPKFTYVDGSPGGKWVATSECAICLLEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAPFAVARC. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03261 155 CDD RING-H2_EL5-like 104 147 - -
Seca7g03261 155 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 151 - -
Seca7g03261 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 152 IPR013083 -
Seca7g03261 155 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Seca7g03261 155 Pfam Ring finger domain 104 147 IPR001841 -
Seca7g03261 155 FunFam E3 ubiquitin-protein ligase ATL6 66 153 - -
Seca7g03261 155 SMART ring_2 105 146 IPR001841 -
Seca7g03261 155 SUPERFAMILY RING/U-box 83 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03261 Seca-Chr7 95556295 95556762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03261 1 155 C3H Transcription Factor Family AT1G76410 60.127 5.05e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03261 - - vun:114170353 220.705