Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03228 ATGGCAAACTGTCACCGGAATAACGTCGGAAATCTCGTTCTCGGCCACCACCACCACCACCATACCAAGACGGCCACCTTCGCCAGCCATTTCCGTCTATGGAACTCCCTCTCCGCCGCCTCACTACGCCGGTTAATCTTCGACGCCGTCAGCTGCGGCGCCAGCTCTCGCTATCACCACCGTCGCCGCCACCACGACGATGACGACTTTCCGTCGACGGCGAGATCGGACTCCTCCTCCTCGTTCGACGAGAAACGGCATCAACAACAAATACGACGAAACGACGAGCATAGTTCCAAGCCGAATAATGCGAGGTCGGAGAAGCTATCGGATCTTCTGAACATGGCGGAGTTTGAAGCGGACGTGGAGACGAAGAAGAAGGAGGAGGCGCTGGAGGAGCTGAAGCGGCTCGTGAAGGAGTTGCAGCAGGAAGAGGATTCGGTGAAGCGGCGAGAGGCTGCGGCCACCGTGAGGATGCTCGCGAAGGAGAACTTGGAAGTGAGAGGAACGCTCGCGATGCTTGGAGCCATTCCTCCTCTCGTTGCAATGCTCGATTTGGAAGACCTTGATTCTCAGATCGCTTCGCTCTATGCGTTGCTCAATCTTGGAATCGGAAACGATGCAAATAAAGCAGCAATTGTCAAAGTTGGCTCTGTTCACAAGATGATCAATCTCATTGAATCTCCAGATGGTCCAGATTCGGCGGTCTCTGAAGCAATTGTTGCAAATTTCCTTGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGGTCCTCTGCTGCAGTACCATTCTTAGTTAGAACCCTCAAGAGCTTAGATAATCAAAGTAGCCCCCAAGCTAAGCAAGATGCTCTCAGAGCACTGTACAATCTTTCAATCTTCCCAGCCAATATATCATTCATTTTGGAAACGGATTTGGTCCCATTTCTGATCAACTCAATAGGAGACATGGAAGTAACTGAAAGAACCCTCGCAATCCTTAGCAATTTGGTATCAACCCGAGAGGGTAGAAAAGCTATCAGTGCTGTGTCAGATGCGATTCCTATCCTGGTTGATGTATTGAATTGGACAGACTCACCAGAATGCCAGGAAAAAGCATTGTACATTTTGATGGTTATGTCACATAAATCCTACGGTGACAGGCAGGCCATGATTGAGGCAGGGATTGTGTCATCACTGCTTGAGTTGTCACTTATTGGTAGCACATTGGCTCAGAAAAGGGCCTCAAGGATGTTGGAAAGTTTGAGGGTAGACAAAGGGAAGCAGGTTTCTGGGAGCTATGGTGGAAATTTAGGCGCAACTGTCTCTGCCCCTATTTGTGGATCTTCATCATCTTATACAAAGCCAGATGGAGGAGAAAAAGAGTGTTTTGAAGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCTATTAGTCCAGCAGAGTTTGCAGAACAACATGAGGAAGATTGTAAAGAGGGCCAACTTGCCTCAAGATATTGTTCCATCAGATCATTTCAAGTCACTTACTTCAAGTTCGACATCAAAGAGCCTGCCATTTTGA 1554 0.4833 MANCHRNNVGNLVLGHHHHHHTKTATFASHFRLWNSLSAASLRRLIFDAVSCGASSRYHHRRRHHDDDDFPSTARSDSSSSFDEKRHQQQIRRNDEHSSKPNNARSEKLSDLLNMAEFEADVETKKKEEALEELKRLVKELQQEEDSVKRREAAATVRMLAKENLEVRGTLAMLGAIPPLVAMLDLEDLDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMINLIESPDGPDSAVSEAIVANFLGLSALDSNKPIIGSSAAVPFLVRTLKSLDNQSSPQAKQDALRALYNLSIFPANISFILETDLVPFLINSIGDMEVTERTLAILSNLVSTREGRKAISAVSDAIPILVDVLNWTDSPECQEKALYILMVMSHKSYGDRQAMIEAGIVSSLLELSLIGSTLAQKRASRMLESLRVDKGKQVSGSYGGNLGATVSAPICGSSSSYTKPDGGEKECFEEEEDMMSEEKKAVKLLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03228 517 Coils Coil 120 154 - -
Seca7g03228 517 MobiDBLite consensus disorder prediction 57 110 - -
Seca7g03228 517 SMART arm_5 377 418 IPR000225 GO:0005515
Seca7g03228 517 SMART arm_5 164 204 IPR000225 GO:0005515
Seca7g03228 517 SMART arm_5 295 333 IPR000225 GO:0005515
Seca7g03228 517 SMART arm_5 334 376 IPR000225 GO:0005515
Seca7g03228 517 SMART arm_5 206 249 IPR000225 GO:0005515
Seca7g03228 517 SMART arm_5 250 294 IPR000225 GO:0005515
Seca7g03228 517 SUPERFAMILY ARM repeat 133 416 IPR016024 -
Seca7g03228 517 Gene3D - 105 274 IPR011989 -
Seca7g03228 517 Gene3D - 275 427 IPR011989 -
Seca7g03228 517 MobiDBLite consensus disorder prediction 61 104 - -
Seca7g03228 517 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 26 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03228 Seca-Chr7 94601526 94603717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03228 131 440 U-box Gene Family AT1G24330 31.562 2.05e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03228 - - psat:127098188 678.322