Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03226 ATGGGGGCACGACTGAGTCTCCCCCGCGCGGGCAGCACCTCTCGCTGCAGAGGTGGCGAATCTGACGGAGACACGCCGGTGCGTGGTTGGTGGCGGAGCGGAGCTGCTCACGCAAGCAGCAAATCTTGCTCCAACGGCGCCCGATATAGCAGTACATGGTGGAGCTCCGGCGCGGCGGGCGGTGCTGGTAACCCATATAGGTTGTTCAGTGGGAATATTTTGCTTGATTCTAATATGGTGCAGCCAAACTGGCTAACTTTGGAGTATCAGTGTGCTAAAGAAGAAGATTTATTGATGCAGAACAAGGCTCTTTATGAGGATAAGGAGAAATTATTCCAGGTGGATACTATGATTGTCCAGGCTATTGGTTTACTTGATGATCTTGACAAAGAGTTGAAGTCATATGCTATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCAGAGCTTACCAAAACCATACAGGATAACATCCATTATGCAAAGGCAGTCAAGTTGATGGATGATCACGCTAATGTCGCAGAGCTTGATTTCTCTGAGGTAGAATTAGATATACTTGATAAAAATTTCATGCTCAATCTTATTAACAGGTTCTTGCTCTTTGGGTTTGAGGAAGATGAGGTTGTTTGTTTGGATAATGGGAAGAAGAGCAACAAGAAGAGATTGATTTCTCAAGAGATTGGGGAAACATTTTTTACTGTTCCAAAGGACTTTTGCTGTCCTATATCATTGGATTTGATCGGAGGTCTATTTCAAGGTGGATGGAAGAAGGGCATTGTACTTGTCCGAAAACGGGGCAATTGCTTTCACACAACCGCATTGTTCCTAATCGTGCTCTTAGGAACTTGA 849 0.4535 MGARLSLPRAGSTSRCRGGESDGDTPVRGWWRSGAAHASSKSCSNGARYSSTWWSSGAAGGAGNPYRLFSGNILLDSNMVQPNWLTLEYQCAKEEDLLMQNKALYEDKEKLFQVDTMIVQAIGLLDDLDKELKSYAMRVREWYGWHFPELTKTIQDNIHYAKAVKLMDDHANVAELDFSEVELDILDKNFMLNLINRFLLFGFEEDEVVCLDNGKKSNKKRLISQEIGETFFTVPKDFCCPISLDLIGGLFQGGWKKGIVLVRKRGNCFHTTALFLIVLLGT. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03226 282 Gene3D - 96 197 - -
Seca7g03226 282 SMART NOSIC_2 117 169 IPR012976 -
Seca7g03226 282 Pfam snoRNA binding domain, fibrillarin 124 176 IPR002687 -
Seca7g03226 282 MobiDBLite consensus disorder prediction 1 28 - -
Seca7g03226 282 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 112 181 IPR045056 GO:0030515|GO:0031428|GO:0032040
Seca7g03226 282 SUPERFAMILY Nop domain 113 179 IPR036070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03226 Seca-Chr7 94572892 94581492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03226 91 247 U-box Gene Family AT1G29340 28.205 2.95e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03226 K14565 - jre:118343775 123.635