Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03224 ATGCGTGTTCTTGCTGTTGATGATGACCCAACATGTCTCATGGTTTTGGAGACTCTGCTCAGAAGGTGTCAATACAATGTAACTGCAACTAAAAATGCAATATCGGCACTGAAATTGTTGAGAGAAAACAAAAACAGGTTTGACTTGGTAATCAGTGATGTTCACATGCCAGACATGGATGGCTTTAAGCTGCTTGAGCTTGTGGGTCTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGATGACCCAAAGATGGTGATGAAGGGAATAACTCATGGAGCTTGTGATTATTTGTTGAAACCTGTTAGAATTGAGGAGTTACAGAACATTTGGCAGCATGTAATAAGGAGGAAGAAGATTGATCTGAAGGAGCTGAACAAAACCAGCAACGAAGACACCCTTAATTCTGGTAACAGCAATGGACAAGGATCAGTACCGACAACAAATTCAGATCAAAATGAAAAGCCATCCAAAAAAAGAAAGGATCATGATGAAGATGATGATGAGGAGCATGAGAATGGTGACAATGATGACCATTCAACCCAGAAGAAGCCTAGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTTTGCTGTTAACCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTAATGAATGTTGAAAAGCTCACAAGGGAAAATGTGGCCAGTCATCTGCAGAAATATAGACTTTATCTGAAAAGAATCAGCTGTGAGGCAAACCAACAAGCTAATATGGTGGCGGCCTTAGGTGGTGCAGATACATCTTATTTGGGAATGAGTTCTCTAAGTGGGGTTAGACATTTGCACTCATTGAGTGGTTCTAGACAGTATGATAACAACCCTTTCAGACCCTTTGCACCTGGTGGGATGATGAGTAGATTGAACACTCCTGCTAGTCTGAATCTTCCTGGGTTGTCTTCTTCTGGATCTCTTCAGTTGGGACATGCACAAAATGTAAACAAAAACACAAATGATCAGCTTAAGTTCCAATCAGCCATAGCTCATGGAAATCAGAGTGGTGGTCAGGGAAGGCCAATTTCTGTAGGGCTAGATCAGTTGCAACACAACAAGGGTGTTAGTCCTATTCTTTTAGATCAGAAAACAAAAGTAACAATGGGTTTCTCACCTTCTGTTTTGAATATATCAAACAATGGCTTGGTGTTGGAAGCAAATCCACAAGACAAACAAGTTGGTGGAGTATATGAAAATTCAACTTCAGCGGCCTCTCAACTTTCACAATTTTCTGTGCTGGATAATGACAGGTGTAATGATATTTGGTCAAGTGCTATACAAACATCTGAGACAAATTCTTATCTTCCAAGTGAATATTTTGGACAACCATCTATGCTTCCTACAGATATGATGACTTCTGTACCCTTGCAAGGGGGGAATTCGAGTGGACCCTTGCAAGGGGGGAATTTGAGTGCTGTTTCATCCATCACTCCATTGTCCACTCAACCCCATACATTAACAAATATGCACTCCCAAGGTGTCAATTTTACAATTGTTCCTGAGCAAGTAAACAGTAATCTTCCATTTCAAGGGTGGGATAACAATAATCAAGATGGTAGTTACCATTCTCAAGTTATTGGTAGCCCAATAGGCTCTCTGATTACTGTGAATGGTGCAGCTGATCCAGAAGGCCATACTCCAATCAACTCAACCTTCAACAGAAACCTGGACTTTGATTTTTGTGATCCCTTACAAATGAAGCATGATGGGATCATTGAATTAACTGAAGAGACCTCATTGAAACCAAATCAACATATGATGAACCTGCAGAAGTCTCAAAATAGTCGCATCATCTCTAATAATCTTGGCTCACTGGAAGACTTGGTCACTACAATGATGAAACAGTAA 1887 0.4038 MRVLAVDDDPTCLMVLETLLRRCQYNVTATKNAISALKLLRENKNRFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEELQNIWQHVIRRKKIDLKELNKTSNEDTLNSGNSNGQGSVPTTNSDQNEKPSKKRKDHDEDDDEEHENGDNDDHSTQKKPRVVWSVELHRKFVFAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCEANQQANMVAALGGADTSYLGMSSLSGVRHLHSLSGSRQYDNNPFRPFAPGGMMSRLNTPASLNLPGLSSSGSLQLGHAQNVNKNTNDQLKFQSAIAHGNQSGGQGRPISVGLDQLQHNKGVSPILLDQKTKVTMGFSPSVLNISNNGLVLEANPQDKQVGGVYENSTSAASQLSQFSVLDNDRCNDIWSSAIQTSETNSYLPSEYFGQPSMLPTDMMTSVPLQGGNSSGPLQGGNLSAVSSITPLSTQPHTLTNMHSQGVNFTIVPEQVNSNLPFQGWDNNNQDGSYHSQVIGSPIGSLITVNGAADPEGHTPINSTFNRNLDFDFCDPLQMKHDGIIELTEETSLKPNQHMMNLQKSQNSRIISNNLGSLEDLVTTMMKQ. 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03224 628 MobiDBLite consensus disorder prediction 131 185 - -
Seca7g03224 628 Pfam Myb-like DNA-binding domain 188 238 IPR001005 -
Seca7g03224 628 SMART REC_2 1 113 IPR001789 GO:0000160
Seca7g03224 628 CDD REC_typeB_ARR-like 3 117 - -
Seca7g03224 628 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 242 IPR017930 -
Seca7g03224 628 Pfam Response regulator receiver domain 3 111 IPR001789 GO:0000160
Seca7g03224 628 ProSiteProfiles Response regulatory domain profile. 2 117 IPR001789 GO:0000160
Seca7g03224 628 SUPERFAMILY Homeodomain-like 183 243 IPR009057 -
Seca7g03224 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 342 IPR045279 GO:0009736
Seca7g03224 628 FunFam Two-component response regulator 182 245 - -
Seca7g03224 628 NCBIfam myb-like DNA-binding domain, SHAQKYF class 186 239 IPR006447 GO:0003677
Seca7g03224 628 SUPERFAMILY CheY-like 1 121 IPR011006 -
Seca7g03224 628 MobiDBLite consensus disorder prediction 131 154 - -
Seca7g03224 628 MobiDBLite consensus disorder prediction 155 169 - -
Seca7g03224 628 Gene3D - 1 163 - -
Seca7g03224 628 Gene3D - 182 245 - -
Seca7g03224 628 PIRSF RR_ARR_type-B 1 628 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03224 Seca-Chr7 94505619 94508804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03224 1 402 Response Regulator Gene Family AT2G25180 53.571 6.87e-119 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca7g03224 Response_reg 2.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03224 - K14491 gmx:100803879 793.497