Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03220 ATGAACAAGGAGCCACCATACCTCTGTGATAGAGATAGAGATAGACCCTGCATCTTCTCTGCTCAAGAGGCACCTCCAAGTCCAAGTACCCCATTGCAGAATCCACAGGAAAAGAAGAAAGAGCAATCTGTTGAAGAGGAAGAAGAAGAAAAGGTGGATACTTTATTGGATCTGAATGTCTCTAGCAATGATTTCAACCCAGAACTCAATCTCATCACTTGTTTAGATGTTGATTCATCATCTAATGCTAATTCATCAGAAAACCCTCTTGGTTCTTCTGATGCAGAGCCAAGGGTGTTCTCTTGCAACTATTGTCATAGAAAGTTCTACAGTTCACAAGCTTTAGGGGGACACCAAAATGCTCACAAGAGGGAGAGATCAATAGCAAAAAGAGGGCACAGATTTGGAACACAGATAATGGCCTCAGCAGCAGCTTTTGGAGTCCCTCTTCTGCATAATCAAAGGTATTCAAGCATGGCTTCTCTGCCACTCTATGGTGGTTGTAGTAATAGACCTCTTGGAATTCAAGCACACTCCATGATCCAAAAGCCTTCTTCTCATATTTCCTCTAATGGGTTTGGAAGCTCTTTTGGTCACCATCATGGTTGGTCAAGACCCCTTATAGATCAACAACCTGGAATAGCAAAGCTAGCTGTGGCAGATTTTCATAGAACAACATCAGCATTATCATCATCAAGAGGAAGTGTTGGTAGGTTTGAAGTGGTAGATACAATGATGAATTCTGCATCTAATAAAGAAATTAGTGGTTATCATCAGCTGGTTAGTGGAGGAACTCGTTTGAAGAGTAATAATAATCAAGAAGAAATCAAGCACCTTGATTTATCCCTCAAGCTCTGA 858 0.4114 MNKEPPYLCDRDRDRPCIFSAQEAPPSPSTPLQNPQEKKKEQSVEEEEEEKVDTLLDLNVSSNDFNPELNLITCLDVDSSSNANSSENPLGSSDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIMASAAAFGVPLLHNQRYSSMASLPLYGGCSNRPLGIQAHSMIQKPSSHISSNGFGSSFGHHHGWSRPLIDQQPGIAKLAVADFHRTTSALSSSRGSVGRFEVVDTMMNSASNKEISGYHQLVSGGTRLKSNNNQEEIKHLDLSLKL. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03220 285 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 285 IPR044246 GO:0009788
Seca7g03220 285 Gene3D Classic Zinc Finger 83 145 - -
Seca7g03220 285 MobiDBLite consensus disorder prediction 23 37 - -
Seca7g03220 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Seca7g03220 285 MobiDBLite consensus disorder prediction 1 18 - -
Seca7g03220 285 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Seca7g03220 285 MobiDBLite consensus disorder prediction 1 51 - -
Seca7g03220 285 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03220 Seca-Chr7 94302401 94303258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03220 11 285 C2H2 Transcription Factor Family AT5G10970 40.068 3.18e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g03220 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03220 - - lja:Lj5g3v0526470.1 335.495