Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03205 ATGGCCAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCTGAGATTCGCCACCCCATTTTGAAGACTAGGATATGGCTTGGTACTTTTGAAACAGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGCCAGAGCAAGAACAAATTTCCCTTTTAACCCAAATATGTCTCAATCTTCATCTTCTTCTTCTAAGCTTCTCTCATCAACTTTGACTGCTAAATTGCATAGATGCTATATGGCTTCTTTGCAAATGACTAGGCAATCTTTACCACCAGAGCCTCAAAGGGTGCCTCCAGCATCCAATTTCAATGATACGGTTTTGTCACAACAAAAGAGACAACAGGTGATAGATGAGCAAGAAGAAGCGGCAGAGACCACCAGAGTTGGTGTGGAAATTAGTGCTAGTGCTCCTCAACAACTACAGTTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATTGAAGAGCTTCTTGATTATGGGTCCATTGAACTCTGTTCTGTCTGA 549 0.4372 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNMSQSSSSSSKLLSSTLTAKLHRCYMASLQMTRQSLPPEPQRVPPASNFNDTVLSQQKRQQVIDEQEEAAETTRVGVEISASAPQQLQFKPLEEDHIEQMIEELLDYGSIELCSV. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03205 182 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Seca7g03205 182 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 133 - -
Seca7g03205 182 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Seca7g03205 182 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Seca7g03205 182 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Seca7g03205 182 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Seca7g03205 182 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Seca7g03205 182 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca7g03205 182 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Seca7g03205 182 FunFam Ethylene-responsive transcription factor 2 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03205 Seca-Chr7 93841823 93842610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03205 1 182 AP2-EREBP Transcription Factor Family AT5G25190 66.120 3.13e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g03205 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03205 - - gmx:100785918 240.35