Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03188 ATGGCGTACCACAACCAGCACCTCTCTCAAGACCTACCTCTCCATCATTTCACAGACCAATCCAACTCCTTGCGTTCCATATTACCAGACCAACTACCCTCCTCACCCGACCCTAACTCCAAACCAACCTCCGATCCACACCACAACCACCCTCTCCAAACCGCACCCAATTGGCTCAACAACGCTCTCCTTCGCACTCACTACACCGACAACAACAACGACGCCACCGTTAACGCTTCCAATTTCCTCAACCTCCACACGGCCTCTGACTCCTCCGCCGTCGCCGGCACTACAAACCAAACCTCCGGCCAATGGCTCTCCCGCCCGATCCTCCACCGGAACCACAGCGAGGTCATCGATGACGTCGCCGCCGCTGCCGTCGCCGGAGACTCTATCGTCGCCGGCGGGACAGCAGCCTCGTTGTCGCACGAATCCGCCGATTTGAAGGGCGACAAGGGCGAGGCAGTGGTCGGAGACGTCGACGGAGGCGCCGGCGGGCTGGTGAACTGGCAGATTGGGAGGTGCAAGGCGGAGATTCTGGCGCATCCGCTGTATGAGCAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATTGACGCTCAGTTGGCGCAGTCTCAGAATGTGGTTGCCAAGTACTCAGCGTTTGGACATGGAGCTCAGAACATGGGTGGGGATGACAAAGAACTAGACCAGTTCATGTCGCACTATGTTTTGTTGCTTTGTTCCTTCAAAGAACAATTGCAGCAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGATCAAGTAGATAGTGATGCCAATCTGTTTGATGGTAGTTTGGATGGGTCAGATAACATGGGATTTGGCCCTCTTATTCCTACAGAGAATGAGAGGTCCCTCATGGAGCGAGTGAGACAGGAATTAAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGGCGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCCTGGTGGCAATCACATGCTAAGTGGCCTTACCCTACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTATTCTTATGAAAACTGGTCTTTTTATTTTGGGAAAATTACACTGAACTCCCCTGTGGTTAAAGCTTGTTACACTGACTCCCTTTTTGTTGAGGAAATTACACTCACATCCCTTGCTATGTTATTTTTAATTTTAAGGATACTTAGAAGTAATGCAGGTGATAACAGTGTTGATCGTCGCATGTAA 1500 0.4993 MAYHNQHLSQDLPLHHFTDQSNSLRSILPDQLPSSPDPNSKPTSDPHHNHPLQTAPNWLNNALLRTHYTDNNNDATVNASNFLNLHTASDSSAVAGTTNQTSGQWLSRPILHRNHSEVIDDVAAAAVAGDSIVAGGTAASLSHESADLKGDKGEAVVGDVDGGAGGLVNWQIGRCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQNMGGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRYSYENWSFYFGKITLNSPVVKACYTDSLFVEEITLTSLAMLFLILRILRSNAGDNSVDRRM. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03188 499 ProSiteProfiles 'Homeobox' domain profile. 361 424 IPR001356 GO:0003677
Seca7g03188 499 MobiDBLite consensus disorder prediction 26 55 - -
Seca7g03188 499 SMART HOX_1 363 428 IPR001356 GO:0003677
Seca7g03188 499 MobiDBLite consensus disorder prediction 41 55 - -
Seca7g03188 499 SMART KNOX1_2 173 217 IPR005540 GO:0003677|GO:0005634
Seca7g03188 499 Pfam KNOX1 domain 176 216 IPR005540 GO:0003677|GO:0005634
Seca7g03188 499 SUPERFAMILY Homeodomain-like 363 427 IPR009057 -
Seca7g03188 499 SMART ELK_2 341 362 IPR005539 GO:0003677
Seca7g03188 499 FunFam homeobox protein knotted-1-like 3 isoform X1 362 423 - -
Seca7g03188 499 Pfam ELK domain 341 362 IPR005539 GO:0003677
Seca7g03188 499 CDD homeodomain 364 425 IPR001356 GO:0003677
Seca7g03188 499 SMART KNOX2_2 229 284 IPR005541 GO:0003677|GO:0005634
Seca7g03188 499 Pfam KNOX2 domain 234 283 IPR005541 GO:0003677|GO:0005634
Seca7g03188 499 ProSiteProfiles ELK domain profile. 341 361 IPR005539 GO:0003677
Seca7g03188 499 Pfam Homeobox KN domain 381 420 IPR008422 GO:0003677|GO:0006355
Seca7g03188 499 Gene3D - 362 423 - -
Seca7g03188 499 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 91 425 - -
Seca7g03188 499 MobiDBLite consensus disorder prediction 283 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03188 Seca-Chr7 92978727 92983306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03188 1 438 Homeobox Transcription Factor Family AT5G25220 67.105 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca7g03188 KNOX2 3.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03188 - - pcin:129303573 677.937