Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03164 ATGGGGAAGCCGGCGGGGAAGAAGAAGGATCATGAAACTCAGAGGGCGAACAGTGGTAACAAGAAGGGTTGGGAGCGTGCGTCGTCGAAGGCTTTAGACGACGACACCGCCATGTTCATCAACATGTCACAGGAGCTGAGAGAAGAAGGTAACAGGCTATTTCAAAAGAAGGACCACGAAGGCGCGATGTTGAAGTACGAGAAGGCCCTGAAGCTCCTTCCCAAGAGTCACATCGACGTGGCACACCTTCACACCAACATGGCCGTTTGTTACATGCAATTGGGCCTCGGTGAGTACCCTCGAGCCATCAACGAGTGCAACCTCGCCTTGCAGGTTTCCCCTCGCTACAGCAAGGCCCTGTTAAAGAGAGCCAAGTGCTATGAAGCGCTGAACCGGTTGGATTTGGCCATGAGAGACGTTCGCGTTGTGTTGAATTCAGAGCCTAATAATCTCACCGCTTTGGAGATTCTGGATAGTTTGAGAAGCACCATGGATGAGAAAGGGATTACTATTGATGAGACAGAGATTGCTCTGGCCACTATACAGCAGCAGGAGCCTCCCGCGGCTCGGTTGAGGAAAGTGGTGAGGGAGAAGCTGAAGAAAAAGAAGGAACATGAAGAGGAAGACAAAGAAACCAAAACCAAAACCAAAATCAAGGTTGTTGTTGAGGAGAAGGCAAATGCTAAGAATGTTAAGGAGAAGGACAAGAAGGATAAGGATGAAGATAAGGATAAGGATAAGGATGAGAAAGAATTCGTTAAGAAAGATAAAGCAGTCACCAGGACTGTGAAATTGATATATGGGGAAGACATAAGGTGGGCGCAGTTGCCTGTGAATTGTAGCATGAAATTGGTGAGGGATGTGATAAAGGACCGGTTTCCGGGGTTAAAGGGTGTTCTTGTTAAGTATAGGGATAGGGAAGGTGATTTGGTAACTATTACTACTACTGCTGAATTGAGATTAGCTGAGATCTGTCATGTTCTTGGCTCAATTCGGCTCTATATTACGCAGGTGGATCCGGATCAGGAACCGTGTTATGATGAAACAACAACCAGTCATGGTGGGGTGCAAATGGAGAATGGGGCTGCTGAAGGAGGCAGAGGTGGGGGTAATAGGATGACTACCGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAATCATGTTGGGTTTGATTCTGATGCGTATCTGGATATTCATGAGGTTGGGATGAAGCTATATTCAGAAGCAATGGAGGATACCGTGACGAATGATGGTGCTCAAGAGCTGTTTGATATTGCTGCTGATAAATTTCAAGAGATGACTGCTTTGGCTTTGTTTAATTGGGGGAATGTTCATATGTCCAAGGCGAGGAGGCGAGTTTCCTTTCCAGAGGATGGGCCAAGAGAAGCTTCTTTTGAGCATATTAAAGCTGCATATGAGTGGGCTCAAAAGGAGTACAAGGAAGCAGAAATGAAATATGAAGAAGCTGTGAAAATCAAACCTGACTTTTATGAAGGACTTCTTGCTCTAGGGTATCAGCAGTTTGAGCAAGCAAAGCTCTGCTGGTGTTATTTAACTGCCAACAACACGGATTTGGAAATTGGCCCTTCCGAGGAGGTTCTGCAGCTCTATAACAAAGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAGATTGAGGAGCAGCGATTGAATGGACTATCCAAATTAGATAAATATAATGCACAGTTAGAGAATATGGGGTTGCATGGTCTTTTCAGGGATGTTTCTTCTGATGAAGCTGAAGAGCAGGCTGCAAAGATGAGGTTACAGATATATCTTTTATGGGGCACCTTATTGTATGAGCGTTCTGTTGTGGAATATAAGCTAGGCCTACCAACATGGGAGGAATGTTTGGAGGTTGCGGTTGAAAAGTTTGAACTAGCTGGAGCTTCTTCATCTGACATTGGTGTCATGATAAAGAATCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCGTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCATCATTTCGACTTGAACCTTTGTTTCGTCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAGATTTAA 2124 0.4529 MGKPAGKKKDHETQRANSGNKKGWERASSKALDDDTAMFINMSQELREEGNRLFQKKDHEGAMLKYEKALKLLPKSHIDVAHLHTNMAVCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYEALNRLDLAMRDVRVVLNSEPNNLTALEILDSLRSTMDEKGITIDETEIALATIQQQEPPAARLRKVVREKLKKKKEHEEEDKETKTKTKIKVVVEEKANAKNVKEKDKKDKDEDKDKDKDEKEFVKKDKAVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIKDRFPGLKGVLVKYRDREGDLVTITTTAELRLAEICHVLGSIRLYITQVDPDQEPCYDETTTSHGGVQMENGAAEGGRGGGNRMTTVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKLYSEAMEDTVTNDGAQELFDIAADKFQEMTALALFNWGNVHMSKARRRVSFPEDGPREASFEHIKAAYEWAQKEYKEAEMKYEEAVKIKPDFYEGLLALGYQQFEQAKLCWCYLTANNTDLEIGPSEEVLQLYNKAEDSMEKGMLMWEEIEEQRLNGLSKLDKYNAQLENMGLHGLFRDVSSDEAEEQAAKMRLQIYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSSDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQI. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03164 707 Pfam PB1 domain 260 334 IPR000270 GO:0005515
Seca7g03164 707 Coils Coil 475 495 - -
Seca7g03164 707 MobiDBLite consensus disorder prediction 349 369 - -
Seca7g03164 707 PANTHER PROTEIN CLMP1 1 705 IPR044517 -
Seca7g03164 707 Coils Coil 188 216 - -
Seca7g03164 707 SMART tpr_5 43 76 IPR019734 GO:0005515
Seca7g03164 707 SMART tpr_5 81 116 IPR019734 GO:0005515
Seca7g03164 707 SMART tpr_5 466 499 IPR019734 GO:0005515
Seca7g03164 707 SMART tpr_5 117 150 IPR019734 GO:0005515
Seca7g03164 707 MobiDBLite consensus disorder prediction 1 19 - -
Seca7g03164 707 ProSiteProfiles PB1 domain profile. 260 338 IPR000270 GO:0005515
Seca7g03164 707 SUPERFAMILY CAD & PB1 domains 260 350 - -
Seca7g03164 707 MobiDBLite consensus disorder prediction 229 251 - -
Seca7g03164 707 Gene3D Tetratricopeptide repeat domain 405 563 IPR011990 GO:0005515
Seca7g03164 707 Gene3D - 250 337 - -
Seca7g03164 707 CDD PB1 262 335 - -
Seca7g03164 707 Gene3D Tetratricopeptide repeat domain 41 168 IPR011990 GO:0005515
Seca7g03164 707 MobiDBLite consensus disorder prediction 1 30 - -
Seca7g03164 707 SUPERFAMILY TPR-like 43 511 IPR011990 GO:0005515
Seca7g03164 707 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
Seca7g03164 707 SMART PB1_new 260 338 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03164 Seca-Chr7 92253530 92259182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03164 33 150 Calmodulin-binding Proteins AT3G25230 30.709 4.23e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03164 K26538 - mnt:112092242 905.59