Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03124 ATGGGTGTCAGAAATTCGCCACCCATTACTAGGAAGAGAAGGGTATGGCTTGGAACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGTCACAATGCCAAGACCAATTTCCCTTTTACACCAAATGTTCAACCTGAAGGTTCCAGTGCCACAACAAATCATGATGGCTCTTTCTTCTCTCCCAAGGCTCTTTCTGATCTCCTGAGCAAAAAGCTCATGAGGAAGTGCTGCAAAGACCCTCCTTCTCCATCCCTCACTTGTCTGAGGCTTGATGCTGACAATTCTCACATTGGAGTGTGGCAAAAAGGGGCTGGATCAGATTCAGACTCTAATTGGATCATAAGGGTAGAGCTTGGAAAGAAAAATGCAGAGGGTGAATCAACTGTGTCAGCAGAATCACCACCAAACACTATTGATGATGCTGGAAATGGGGTGGATAATGAAGAAGAGGACAGAGTGGCCGTACAGATGATTGAAGAGCTACTTAATTGGAACAATCCATGTGATTCAAGTAACTTTCAGGAAGAAAAATGGAACCTTTCTTGTCAGAGTTCTTGA 585 0.4462 MGVRNSPPITRKRRVWLGTFETAEAAARAYDQAAILMSGHNAKTNFPFTPNVQPEGSSATTNHDGSFFSPKALSDLLSKKLMRKCCKDPPSPSLTCLRLDADNSHIGVWQKGAGSDSDSNWIIRVELGKKNAEGESTVSAESPPNTIDDAGNGVDNEEEDRVAVQMIEELLNWNNPCDSSNFQEEKWNLSCQSS. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03124 194 ProSiteProfiles AP2/ERF domain profile. 1 47 IPR001471 GO:0003700|GO:0006355
Seca7g03124 194 SMART rav1_2 2 53 IPR001471 GO:0003700|GO:0006355
Seca7g03124 194 MobiDBLite consensus disorder prediction 132 157 - -
Seca7g03124 194 SUPERFAMILY DNA-binding domain 8 48 IPR016177 GO:0003677
Seca7g03124 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 140 - -
Seca7g03124 194 Gene3D AP2/ERF domain 3 48 IPR036955 GO:0003700|GO:0006355
Seca7g03124 194 Pfam AP2 domain 10 40 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03124 Seca-Chr7 90861499 90862944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03124 12 183 AP2-EREBP Transcription Factor Family AT5G25390 54.286 3.41e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g03124 AP2 8.7e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03124 - - lang:109326202 212.231