Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03105 ATGATGGATTCGCCCGAACCTTCCAAGATCAAGGGTAGTTCTTCTGTCCATGCCCTCAATGCCATCGCCAATACTCCTTCATCGGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTAAGATTTGTCAACAATTTATCTCCAATAAAGCCTGTCAAGGCTTGTCATGTGGCACAAGGTTTCCTTGGACTCAATTCTCCACCTCTTGTGTTCAAGTCACCACGTATTAGTCACCGTGATACACAGTTCTTGGAAAGGGCTCAAGGCACTCAGTCATCCAATGGAGAAATATCTCAAAGTGGCAATGGAGGCAACATTCTTGATGAAGCTCCCGGTGATTCCAACAAATCAAATTCTGAACAGCCACTGCAAGAGAGGTTTATAACTGACACTCAGAAGGATATTGACATCAAGAATGATGCAAATAAAAGCTGCAGTCCTACACCATCTGTTGATGAATATTTGGCTGATCCTGGGGATATTGATCATATGTATTCAGTCAACCCAGATGTGGAACAATCTACTGATGCAGTTGAATCATCACTAAGTGACTTACCTCAGTCAAAGAAAAGTCTACTAAATTTTGATAGGAAAGATGATCCTGGTGATAAAGCAGAAGAACCTTTGTCTTTGTCAGATGAATCTAATAGGGTTCAACAAGAAAGACCAGCATATGTTGAAGTGCCTGAGAAAATAGAAGGGGAGATAAAAGATGTTGAATGGACTTCTCAAGATCCCACAAAGTTAGAGTCCAATTTAGCTGCAGATGTTTTTGATAAACAAAATAGTCATGATTCACTTCCCCAGTGTGCAGGAAATGAACGACGGGATCATAATTGCACACCTCAATTATTACCTGATCCTCTGCAGGATATTCAAGAATCCGAAGATTGCAATGAGATGGTCTCAACCTCACATTTAAGTGCTGAGAATATTTCACAAGATGGTTCTGAGGCTAGTCTAAAGTATCATGGCACTCGTAGACGCTGCCTACAATTTGAGGAAGCTGCTTGCAGTGCTTTTGGAAGTAATAAGTCTCATATGAAATTGAATGCAACTTCAAGCCAAATGAAAATGGTCAAGCTGTCCGAACCTATCACTTCTTTGTTTCCTCAACGAGGTAGTGGAAACTTACCTGTGACAGGTTCCAAGCCATCAGGTATTGGGTTGCATTTAAATAGCATCATAAATGCAATGCCACCTGGTCGTTCTTCAACTACGGGTATGAGATTATCAGATGGTTCACAGGGGATGAAATCCACAACTTCAATAAGTTTACATAAAGTGGAGAACATGAAGAGATCCTTAATTTCACCAAATATGGATGGGCAATCATTAGTTGATACTAGAAATGAGAGCCATGGAACTGATGCCTCAGTAGCTGCAGATTCTTTCATTTCTGAACCTCCTAGCTTGACAAAACCTATTACCTTATACCCTGCAAGCGTCCATGATAAAAGGAAACTAAGCCCTACATATGCTGGAAATTCTGAGGAATCCAACCAACCTAGCCCTGGCAAAAAGAAGAAGAAGACATCAGTCGCTTCTGATGACAATGATCGTAAGCGCTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGCTGCTGGAATCTTTTGTGGCGAACATTGTTCTTGCCAAGGCTGCTTAAATAAAGAAGAATATGAAGATAAAGTTCTTGAGACAAAGCAACAAATTGAATCCCGAAATCCACTTGCATTTGCTCCCAAGATTGTACAATGTACCACTGATGTTCAGGCAAATAATATGGAAGATACAAATCTGACAACACCATCATCAGCAAGACACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGGCTAATGTTGGATGCTCAAGTGGATGTAGATGTGAGGGATGTAAGAATGTCTTTGGCAGGAAAGAAGATTATGTTGCCCTGGAACATGCTTTGGGTAAAGAAAGGGTGAGCAGCAGTGTTGAAAGAGGGTCAGATAGCATAATGAACAAAAATCCGGAAATGGTGGCAAGCAGGAGAGATTTATTACAAACAGAGGTGTATAATCTACAGCACCTCTCACCTCTAACGCCATCGTTGCAGTGCTCTGACCAAGGCAAGGATGCTGCACAAGCCAAACTTCTTTCTGGAAATTATCTACCATCTCCTGAATCTGATGTGAATGTGCTCTCATCTGATGCAAATTACACTAAATCATCAGAAAACTTACACAGCAGTCTTACCCATCTGCAAACGAATGAGATGTTGGGAACTTCCTCCTATCATTCTGAAATGGATTGCAACAATGTGAACGTCCAGGATCCATCATCACCACCATGCGATTCAGTGCCAATGGGTAAAGCTTCATCGTTCTCATCTAAAGCAAATGAGTGGAAAAGTGTTCCAGATAGCAAGTTAGTCTTCCATGGATGTATTCGCCAGTTATCTGGGGGCTCTCTTCGTTGGCGTAGTTCCCCTATTACCCCAAAGACTAACGTAGGTGAAACACAATATTTACCGTGTCTTGAATCAGATAGCAAGCTCTTCGACATTCTAGAAGATGAAACACCTGATGTATTGAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCCCCGATCCAAAAGCGGGTTTCTCCTCCCCCGAGTCATGTACGTGGGATTGGGTCAAGCTCCTCAGGAGGCTTGAGAAGTGGCAGGAGATTTGTATTGAGATCTGTACCTTCTTTCCCACCACTGACCCCTTGCGTTGATTCCAAAGGCAATGGCACTGAGGATTCGGGTAACAATGCCAGCAAGTGA 2826 0.4165 MMDSPEPSKIKGSSSVHALNAIANTPSSESPQVQESPFLRFVNNLSPIKPVKACHVAQGFLGLNSPPLVFKSPRISHRDTQFLERAQGTQSSNGEISQSGNGGNILDEAPGDSNKSNSEQPLQERFITDTQKDIDIKNDANKSCSPTPSVDEYLADPGDIDHMYSVNPDVEQSTDAVESSLSDLPQSKKSLLNFDRKDDPGDKAEEPLSLSDESNRVQQERPAYVEVPEKIEGEIKDVEWTSQDPTKLESNLAADVFDKQNSHDSLPQCAGNERRDHNCTPQLLPDPLQDIQESEDCNEMVSTSHLSAENISQDGSEASLKYHGTRRRCLQFEEAACSAFGSNKSHMKLNATSSQMKMVKLSEPITSLFPQRGSGNLPVTGSKPSGIGLHLNSIINAMPPGRSSTTGMRLSDGSQGMKSTTSISLHKVENMKRSLISPNMDGQSLVDTRNESHGTDASVAADSFISEPPSLTKPITLYPASVHDKRKLSPTYAGNSEESNQPSPGKKKKKTSVASDDNDRKRCNCKKSKCLKLYCDCFAAGIFCGEHCSCQGCLNKEEYEDKVLETKQQIESRNPLAFAPKIVQCTTDVQANNMEDTNLTTPSSARHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNVFGRKEDYVALEHALGKERVSSSVERGSDSIMNKNPEMVASRRDLLQTEVYNLQHLSPLTPSLQCSDQGKDAAQAKLLSGNYLPSPESDVNVLSSDANYTKSSENLHSSLTHLQTNEMLGTSSYHSEMDCNNVNVQDPSSPPCDSVPMGKASSFSSKANEWKSVPDSKLVFHGCIRQLSGGSLRWRSSPITPKTNVGETQYLPCLESDSKLFDILEDETPDVLKEASTPIKSVKANSPIQKRVSPPPSHVRGIGSSSSGGLRSGRRFVLRSVPSFPPLTPCVDSKGNGTEDSGNNASK. 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03105 941 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 521 557 IPR005172 -
Seca7g03105 941 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 609 643 IPR005172 -
Seca7g03105 941 MobiDBLite consensus disorder prediction 180 222 - -
Seca7g03105 941 MobiDBLite consensus disorder prediction 1 34 - -
Seca7g03105 941 MobiDBLite consensus disorder prediction 85 125 - -
Seca7g03105 941 MobiDBLite consensus disorder prediction 876 941 - -
Seca7g03105 941 SMART CXC_2 518 559 IPR033467 -
Seca7g03105 941 SMART CXC_2 606 647 IPR033467 -
Seca7g03105 941 MobiDBLite consensus disorder prediction 190 210 - -
Seca7g03105 941 MobiDBLite consensus disorder prediction 502 521 - -
Seca7g03105 941 MobiDBLite consensus disorder prediction 487 521 - -
Seca7g03105 941 ProSiteProfiles CRC domain profile. 519 646 IPR005172 -
Seca7g03105 941 MobiDBLite consensus disorder prediction 85 161 - -
Seca7g03105 941 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 24 928 IPR044522 GO:0003700
Seca7g03105 941 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03105 Seca-Chr7 90366657 90372916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03105 860 923 CPP Transcription Factor Family AT4G14770 44.615 1.61e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Seca7g03105 TCR 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03105 K21776 - gmx:547664 1088.94