Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03048 ATGGCCGTGCTGAGAATGGCTCAGCATAACAATGCCAACAACAAGGTTGGGAGCCAACAACAGCTAGTGAACCCAGTGCTCCATGACTTTCTAGGCATGAAGAAGAAGAACCTCATCGATTCCAATGTCCTTCTTGCTACTAATAAAACCCCCAATGTCCACGTCAGATCCTCTGACACCTCCCCCTCCCCTTCTTCCACCACCGTGTCCCGTGGCGGTGCCCCCTTCTCCACCACCTCTGACCTCGGTTCCGAAAGACAGGCAGGGAATCATCTTGAGGGAGTTCCTTTCTATGGCCCGAGGAGTGATTTTTCTGGAATTGAGATAGGTAACAGACTAGTGGGGAACAAGAGAAGTAATTCTGAATCATCTTTTATGGGTTCCTCTAGAGATGCCTTCCAAATGGTCCCTGATTCCTTTCAAAATTCACATTTGATGAAGATCCTTCGGAATGCAGCTGGAGGGGATCGCCATAGAAGGCCCAGTGATGAGGAAGTATTCCTTGGTATGCAATCACTGAAGCCAGGTTCTAGTTCTCAGACATTTCAGCCTCTCATTGGCACTAAGATTGATGCCAATAAATGGGAGCAGTCTATTCTCATGAACGTTGGCCCTTCCATGCAACATCCACCTCGCGGTGGTCAATTAACACCTTTTATGCACCAAATAACTTCAAACAAGATGAGGGATGCTGGTCCTTCATTTATTTCTCAGTCAGCTGCTGATGAAGGATCTAGAACTGGGATCAAGGGCCCTGGGATTTTGAGTTCTATAAACACAACCAGTGCTGCCACTGAGAAAACTTCATCTGCAGTGCTGCTTGGGGGCAGTAGCAGACCGAAGCCTGTGACCAATATAGTAGACCCAGAGTCTTCCACACCTCTGAGTCGACATGGATTGACATCTGCCAGCTGTCAGATGACTATTTTTTATGGAGGTCAAGCTCATGTGTTTGACAATGTCCAGCCTAATAAGATCATAGTGTTGGATGTTGTTGTGGAGAGGGACTCCAATGCAAAGATCTTGCACTGGCTCGATTCTATCAACTTGGCTCGTATTTGTTACAATCTTTTTTGTCAGCCCTCTTCTGTTCCTGCAATCCAATCCATCATGCCCTTTTGGGCAGATGTTATAATGGCTTTAGCTGGGTCAAACGGGGGATCTTGGTCCACAGCATTCTCACCCAAATCTTCTGCAAAGCTATTCCATGATAGTAACTTGCTAACTGGAGAAAATGAAACGGTTATAGTGAGTACCGAAGCACCACAGGATCTTCATGGGAGATTGTCTATTACCGGAAGTTCTAGTCGCGCCATAGGGACAGGTGATCGAGTAACTACTCTAACAGGGGTACATCAGGGAAGCATTGTAGCTAAAGATACAAGAAATCTGGTTCAAGCAGCAAATCCCAGTTCTGAAGACAAAAGAGCACAATGA 1437 0.4635 MAVLRMAQHNNANNKVGSQQQLVNPVLHDFLGMKKKNLIDSNVLLATNKTPNVHVRSSDTSPSPSSTTVSRGGAPFSTTSDLGSERQAGNHLEGVPFYGPRSDFSGIEIGNRLVGNKRSNSESSFMGSSRDAFQMVPDSFQNSHLMKILRNAAGGDRHRRPSDEEVFLGMQSLKPGSSSQTFQPLIGTKIDANKWEQSILMNVGPSMQHPPRGGQLTPFMHQITSNKMRDAGPSFISQSAADEGSRTGIKGPGILSSINTTSAATEKTSSAVLLGGSSRPKPVTNIVDPESSTPLSRHGLTSASCQMTIFYGGQAHVFDNVQPNKIIVLDVVVERDSNAKILHWLDSINLARICYNLFCQPSSVPAIQSIMPFWADVIMALAGSNGGSWSTAFSPKSSAKLFHDSNLLTGENETVIVSTEAPQDLHGRLSITGSSSRAIGTGDRVTTLTGVHQGSIVAKDTRNLVQAANPSSEDKRAQ. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03048 478 ProSiteProfiles Tify domain profile. 300 335 IPR010399 -
Seca7g03048 478 SMART tify_2 300 334 IPR010399 -
Seca7g03048 478 MobiDBLite consensus disorder prediction 50 97 - -
Seca7g03048 478 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 108 410 IPR040390 -
Seca7g03048 478 MobiDBLite consensus disorder prediction 50 86 - -
Seca7g03048 478 Pfam tify domain 303 325 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03048 Seca-Chr7 88039964 88047892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03048 6 329 Tify Gene Family AT4G32570 34.431 1.81e-41 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca7g03048 tify 1.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03048 - - gmx:100819293 527.709