Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03043 ATGAATAAAGAAAACGCTGCAGTTGCTGGTGTCCGCGTCACTCGAGCAAGGGCTAGAGCCTTGGAAGGGGTATCTGCCTCCTCAAGACCCTCCTTCAAGAAGGAACACAAAAACGACGTAGTTCTTGGACTAAGCTCCAATGTACCTGCTGCCGATAAGAGCAGAGCAGTGCTAACAGATGTAACTAACATACGCAGAAAACCAAACGATAAGCGTATTAAGGCTTCAAAATCTCAGATAAGAGGAGGTTATAAGAAGAGAAACACAAAGGCAGGTTCAGATCATGTATCCAAACAAGTTTTGTCATTCCAAGAGGATGTTAGAGCAAAGATGGCTAAAGATTTATCCACAACAACAGTGGTGGAGTCAAATGACATCGCAGCACAAAGGGTGGGAGGCAGAGAGCCACTGCAGCGTTGTAGCATGAGAGAACCTGTTATGGCATATCCCCTGCTTTCAGTGCAGGACTCTGTGATGTCTGATGAACAACTTTGCTCTCCAAATAAAGACATAGATATGATTTGTGAGAAACGAAGAGCCTTAGATGGCTTGGACGTTGTGGATATTGACTCAGAGTTAAAGGATCGTCAAGTTTGGAGTTCATATGCCCCTGATATATACAATAATATACGTGTCAGAGAGTGTGAAAGAAGACCGTTAACCAATTACATGGACAAGTTACAGCAAGATATCACTCCGATCATGCGGGGAATTCTGGTTGATTGGCTTGTGGAGGTTTCTGACGAATATAATCTAGTTCCAGACACACTTTACCTTGCAGTGAATCTCATTGATCGGTTTCTTTCTAAAAGTTTAATTCAGAAACAGAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTTATTTCATCAAAGTATGAAGAGATTGTGCCTCCTCGAGTGGAAGATTTTTGCTTCATCACTGATAATACATACACGAAAGCAGAGGTATTGAAAATGGAGACTGAGGTTCTAAATCTTCTGTATTTTCAATTATCTGTTCCCACAATCAAAACATTTCTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTTCCTTATGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCTTGATAGCTGCGTCTGCTGTATTACTTGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATCCAACTCTGGAGCATTACACAAATTACAAAGCGTCAGAGCTTAAAACTACTGTCGTTGCACTGACAGATTTGCAACTTAATACCAAAGGCTGTTGTCTTAATGCTATACGTGAAAAATATAAACAAGAGAAGTTCAAAGGTGTGGCAAATTTGCCTCTAATACCAGTGGAGTCACTTTTCTAG 1392 0.4145 MNKENAAVAGVRVTRARARALEGVSASSRPSFKKEHKNDVVLGLSSNVPAADKSRAVLTDVTNIRRKPNDKRIKASKSQIRGGYKKRNTKAGSDHVSKQVLSFQEDVRAKMAKDLSTTTVVESNDIAAQRVGGREPLQRCSMREPVMAYPLLSVQDSVMSDEQLCSPNKDIDMICEKRRALDGLDVVDIDSELKDRQVWSSYAPDIYNNIRVRECERRPLTNYMDKLQQDITPIMRGILVDWLVEVSDEYNLVPDTLYLAVNLIDRFLSKSLIQKQRLQLLGVTCMLISSKYEEIVPPRVEDFCFITDNTYTKAEVLKMETEVLNLLYFQLSVPTIKTFLRRFIQAAQSSYKVPYVELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLNQSEHPWNPTLEHYTNYKASELKTTVVALTDLQLNTKGCCLNAIREKYKQEKFKGVANLPLIPVESLF. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03043 463 Gene3D - 205 453 - -
Seca7g03043 463 Pfam Cyclin, N-terminal domain 205 331 IPR006671 -
Seca7g03043 463 FunFam Cyclin A1 321 453 - -
Seca7g03043 463 SMART Cyclin_C_2 334 457 IPR004367 -
Seca7g03043 463 PANTHER CYCLINS 167 445 IPR039361 -
Seca7g03043 463 Pfam Cyclin, C-terminal domain 334 455 IPR004367 -
Seca7g03043 463 CDD CYCLIN_AtCycA-like_rpt2 334 448 - -
Seca7g03043 463 Gene3D - 219 332 - -
Seca7g03043 463 FunFam Mitotic cyclin 6 219 319 - -
Seca7g03043 463 SUPERFAMILY Cyclin-like 195 331 IPR036915 -
Seca7g03043 463 SUPERFAMILY Cyclin-like 333 457 IPR036915 -
Seca7g03043 463 PIRSF Cyclin_A_B_D_E 13 460 IPR046965 GO:0016538|GO:0044772
Seca7g03043 463 ProSitePatterns Cyclins signature. 236 267 IPR006671 -
Seca7g03043 463 SMART cyclin_7 338 426 IPR013763 -
Seca7g03043 463 SMART cyclin_7 241 325 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03043 Seca-Chr7 87900385 87906065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03043 10 454 Core Cell Cycle Gene Families AT5G25380 52.735 1.78e-143 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03043 K06627 - gmx:100777132 603.979