Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03032 ATGGAGCGGCCCGGGAGCTTCAGCGGCAGTCAGCATATTATAGAAATAGCCGGGAGTCCTGATGCTTCTACGTCCACCCCACCTCGTGATAGACATATTAATGGTGTAGATGTATCACATGAAGAAAGAATAAATAGTGTGCGGTTGTCTGTCACTCAGCCTTCAGTTTCAACCTCTGGTGTATCTAATGGATCGAATAGTAGGAATTCTTCGTTCATAAGACGGGGGGACTCTCGTCGGAATAGAAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAGCTAGTCCTCTTAGTTGGCCAAATTGTTGCATCTATCACTGTTTTGTCATTATCAAGGCATGAGCATCCACGTACACCGTTGTTTCAATGGATAGTGGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTCTTCTTTATTGGCGATATTATCACCATAACCATATGCGAGAGCAAGATTCTTCTCAATCACGTCAAACATCTCCTCGGATTAGTGATCCTTCAGGGATACTTCATTCCAGTTCCAGAACTAACGGGGGAGACAATGGTCAGGCTGCTGCTTCCTCCAGAAGCAATCAAGATTCAGTATTGATGAGCAGAAGCCTGCAACACAGAATGAAGACACTCGTGGAATACTTCAAAATAACCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGAGGACATTCATCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTATTTCTTGCATTTAGCTGTATTGGTTATGCCATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATCTGACACAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTCTGCCAACTTACAAGTTCAAAATGAAGAAAAATAAACGAAATGGTGAAAGCAACTCAGCTGCTGCTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAAGAGCGTGTGATCTCTGGAGAAGATGCAGCCTGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGCTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTCGGTGAAAATATGGTCACTGGAGAAGCTGCCAGCCAACAACGGGGCGAGAGCAGGGTTGAGAATAGCCTCCCAAATACCTCAGTTTAA 1251 0.4365 MERPGSFSGSQHIIEIAGSPDASTSTPPRDRHINGVDVSHEERINSVRLSVTQPSVSTSGVSNGSNSRNSSFIRRGDSRRNRSPVHSGLWISIELVLLVGQIVASITVLSLSRHEHPRTPLFQWIVGYASGCAATLPLLYWRYYHHNHMREQDSSQSRQTSPRISDPSGILHSSSRTNGGDNGQAAASSRSNQDSVLMSRSLQHRMKTLVEYFKITLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLTQNRGATSESINALPTYKFKMKKNKRNGESNSAAAEGGIVAAGTEKERVISGEDAACCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENMVTGEAASQQRGESRVENSLPNTSV. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03032 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 388 - -
Seca7g03032 416 SMART ring_2 344 384 IPR001841 -
Seca7g03032 416 MobiDBLite consensus disorder prediction 395 416 - -
Seca7g03032 416 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Seca7g03032 416 SUPERFAMILY RING/U-box 336 391 - -
Seca7g03032 416 MobiDBLite consensus disorder prediction 154 192 - -
Seca7g03032 416 MobiDBLite consensus disorder prediction 52 84 - -
Seca7g03032 416 MobiDBLite consensus disorder prediction 151 192 - -
Seca7g03032 416 Pfam Ring finger domain 343 385 IPR001841 -
Seca7g03032 416 MobiDBLite consensus disorder prediction 52 72 - -
Seca7g03032 416 FunFam E3 ubiquitin-protein ligase 327 394 - -
Seca7g03032 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 393 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03032 Seca-Chr7 87632616 87640864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03032 74 391 C3H Transcription Factor Family AT1G80400 58.642 2.94e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03032 - - gmx:100778728 679.093