Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03021 ATGCATCGTTTTAATGTATATGATATAACATTGACCGTTTTTATGAACCAGGGACCACAATATGTCTGTACAACTTTCTCGACATTTGTCTGCACAAATTGCAGTGGAATACATCGAGAGTTTACCCATAGGGTAAAATCTGTTTCAATGGCTAAATTTACTCCAGAAGAAGTCACTGCTCTTCAAGCAGGTGGAAATGAGAGAGCAAAACAGATTTATTTCAAAGAATGGGATCCTCTGCGTCATTCTTACCCTGATTCCTGTAATATACACAGACTTCGAGATTTTATCAAGCAGGTCTATGTGGAAAGAAGATTTACTGGTGAAAGGAGTGGTGGTGCCACTGGCAATCTTCCCAGGATTAGATTGAATAACAAGGAGCCCTATGAAAATAGTACTAGGAAGAGTAATTCATTGCGTTTAGAGTTCAAGAGTCCACATTCAAGTCCTGGTGTAAGAAGTGATGACACTGGTTTCAGATATTTATATGATGAAAGCAAAAGTCCAAGATATGTCCAAAAATGTTCAAGGCGTGGCAGTATAGGCAGAAGTCCTATAAAATTTGAGGTTGTTGATGACAGGTTCCGAGATGATGAGTATAGAAACCGCAGGGTTACAAATATAGGATCAAAGTTAAGACATCTTTCACTTGATGGTCAGAAGAGTGTGGAGAAATCCCAAGCTCCTGTTTTACGCCCTTTGGGTGAAATAATAGGGGAAAGTGCTTCATCTCTCCAAGTAACACCTTCTGGTGGTGAGGGTTCTGTTGAGGAAAATCCATCAGAACAAATAAGTAACAATCCAGAAAGCTTCATTGATTTGAGTATTAAGCCTAAGGCTTTTGCTGCTGCTGATGGGGTTGGACCAGAAACACCTCATATGTCACAAGCAAGTGAAAGTAACTGGGCCAAATTTGAAGCTCCTAAAACTCCAGATACCAATACCTTATCTTCTACAACAGAGACAACACCTGAAGCAACATTTGCAAATGCTATAGACCTTTTACTTTTTGAATTGTCAGGCCCTTTGGTTCCAACTTCTGGTGGCAAGTCAGAAGTCCCAAGTGGTGACAATGTTCCAACATGGGATTTTCCATCTACTTCAATGGGGCACACAACTGCATCACCAAACAGTACTGGTGTTTCCTCATTTACATCAACCACTGCCACTGAGCTAACACATCCTTCTAAAGCAGCTCCTCCACAAGCTGGGCCACATGATGCAGAACACTTCATTGAAGTTTCACATGCACATAAACCATCAAGCATTGCTTCTGTATCAGCAAGTTGCAGTTCAACAACACAACCAACAAATGCACCAGTCAAAGCTGTAGTATCAAATAATCAGTCATCAGTTTCTCCTAATAAAATTGACTCCACACGTGCTTTTACTGAACCATTTTCTCAAACCACCTCAAAACCTATTCAAGACACCAGACCTGATGTTGGCTCCCAACCTAGTAGAGTGGAAACCAAGTCTATTGGAAGAAAGGAACTTCCAGAGGACCTTTTTACTGCAAGCTACTTATCTGGCCCTGCAACACTTGCAGGTTGGCAGAATGTTCAACCTCATGCCATGGGGTATGGCATGCAGTATTATCCTAATGCAGTGACTCCCTCAGCAATTCCCATTGCACCAATGTCCACAAACCCATTTGAAGTAACTGAGGGGAGAAATCTAATCCATACCTCATCACTTCCTACTATGGCATCTTTGCAAGGTGTACTGCCAGCTGTATCATCCAGAACAACAGGACTAACACATGCTTCAAGCCTTGGAACTTTAGAGGCAACGGTGCCTCAGTCCACAAGTTTTGCATCACCAGTTCCTCCACAATCTCCCTTTGCATCTGGTGTTCCTACTGGTGTGTACTATAATCAAGTCAATGACAAGCAACCAGCTAGGCCACAAAAAGTTGGCAGCTTCAATGGTAATTTATCTGGTTTTGGATCTCTAGACACCATTCAACAGTCATGTGGGGGATATGGGACACCCAAAACTCCAGATTCCTTTTTCAGTGCAAGAGGAAACCCATTTGAATAG 2043 0.4195 MHRFNVYDITLTVFMNQGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKEWDPLRHSYPDSCNIHRLRDFIKQVYVERRFTGERSGGATGNLPRIRLNNKEPYENSTRKSNSLRLEFKSPHSSPGVRSDDTGFRYLYDESKSPRYVQKCSRRGSIGRSPIKFEVVDDRFRDDEYRNRRVTNIGSKLRHLSLDGQKSVEKSQAPVLRPLGEIIGESASSLQVTPSGGEGSVEENPSEQISNNPESFIDLSIKPKAFAAADGVGPETPHMSQASESNWAKFEAPKTPDTNTLSSTTETTPEATFANAIDLLLFELSGPLVPTSGGKSEVPSGDNVPTWDFPSTSMGHTTASPNSTGVSSFTSTTATELTHPSKAAPPQAGPHDAEHFIEVSHAHKPSSIASVSASCSSTTQPTNAPVKAVVSNNQSSVSPNKIDSTRAFTEPFSQTTSKPIQDTRPDVGSQPSRVETKSIGRKELPEDLFTASYLSGPATLAGWQNVQPHAMGYGMQYYPNAVTPSAIPIAPMSTNPFEVTEGRNLIHTSSLPTMASLQGVLPAVSSRTTGLTHASSLGTLEATVPQSTSFASPVPPQSPFASGVPTGVYYNQVNDKQPARPQKVGSFNGNLSGFGSLDTIQQSCGGYGTPKTPDSFFSARGNPFE. 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03021 680 PRINTS HIV Rev interacting protein signature 45 66 IPR001164 GO:0005096
Seca7g03021 680 PRINTS HIV Rev interacting protein signature 27 44 IPR001164 GO:0005096
Seca7g03021 680 MobiDBLite consensus disorder prediction 113 156 - -
Seca7g03021 680 MobiDBLite consensus disorder prediction 130 144 - -
Seca7g03021 680 Pfam Putative GTPase activating protein for Arf 17 108 IPR001164 GO:0005096
Seca7g03021 680 SUPERFAMILY ArfGap/RecO-like zinc finger 17 107 IPR037278 -
Seca7g03021 680 MobiDBLite consensus disorder prediction 444 492 - -
Seca7g03021 680 CDD ArfGap_AGFG 18 106 - -
Seca7g03021 680 MobiDBLite consensus disorder prediction 444 490 - -
Seca7g03021 680 Gene3D Arf GTPase activating protein 15 115 IPR038508 -
Seca7g03021 680 PANTHER ARFGAP/RECO-RELATED 16 680 IPR044820 GO:0005096
Seca7g03021 680 SMART arf_gap_3 5 114 IPR001164 GO:0005096
Seca7g03021 680 MobiDBLite consensus disorder prediction 241 268 - -
Seca7g03021 680 ProSiteProfiles ARF GTPase-activating proteins domain profile. 19 114 IPR001164 GO:0005096
Seca7g03021 680 MobiDBLite consensus disorder prediction 347 406 - -
Seca7g03021 680 MobiDBLite consensus disorder prediction 360 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03021 Seca-Chr7 86982391 86989596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03021 19 113 C2H2 Transcription Factor Family AT3G07940 30.000 3.40e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03021 - - gmx:102660856 723.391