Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g03010 ATGGACGACGAAGCGAATCGAAATCAAGGCCAAGTTCCTCCGCCACCTCCGCTGGCGGAATCTCAGTCGCACGACGGCGACGGTGAAGAAGAAGATGTTGAGGAGGAGGAGGAGGAAGAAGAGGAGTCGAAGAAGGAAGAAGAGGAGGTCATTGCAAAAGCTAACAAGCTAATGGATAAGATCACTGGTTCTCCTGATAACCCTAAACCCACCGTCCTCCATGCCCTTGCGTCCATTCTTGAAATCCAGGAGTCACGATACATGGAAGAGAATGACCATGCATCATCCAGTAATGCCCGTGCTTCTCATAACATTGGGCGACTTGGGAGCTTAATCCGGGAGAATGATGAGTTCTTTGAGTTGATATCTTCAAAGTTTCTGTCAGAAACAAGATACACCACATCCATTCGGGCTGCTGCTGCCAGGCTTCTCCTGAGCTGTTCGCTAACTTGGATTTATCCCCATGTTTTTGAGGAACCTGTCCTGGAGAACATCAAACATTGGGTAAAGGATGAGAATACTAGTCTGTCTGCTGAGGAACAAAATCTGAAGCGTGTTCCAGGGAGTAAGGAAGCCTCGGATTCTGAAATGTTGAAAACCTATTCCACTGGTCTTCTCGCTGTGTGTTTAGTCGGTGGAGGTCAAGTGGTTGAAGATGTCTTCACATCTGGATTGCCAGCCAAGTTTATGCGATATCTTCGTTTGCGTGTGCTGGGGGAGACAAGTAGCAGCCAGAAAGACACTAATTCTTTAACAGAGAGTAGGCATGCATCTGGGAATACTTCAATGAGAGGTAAAGATGATGGTCGCAACAGATTTCGACAGGTCCTGGAATCAAGTCATTTTGATGATGCAAAGATGATTGACGAGAGATCGTCAGATGATCGAATTCGTGAAAGGGATCCAGATAAAAGCGTTAGTGGACTAATTTTCCAAGAAGATTCTTGTATGGATGAACCTCCTGATGGGTTGAGTGAAGGAGCTGGTATCTGTGAGGTAGGCACTGGTGGAGAGGATAGATGGCACTGTAGAGATATACGTGATGTAAGGGTAAAATATGGTGACCATGAAGACAATGCTAGAGATGACTCCTCAAAACGGCGTGTGAATTGTGGATGGGGAAGATCCAGAGAAAAGGGAAGGGTCAATGAAGGGAATGTAGAAAGTGAACCAGTTTTGTCATCTCCTGGTTCTGGTAGTCGATTAGTACAGGGAAAGAGTGTTAAGGATAGGAACATATTAAGGAATGTCGATATCAAAATGGTGCCTGATTCTAAGAAGAGTGTTGTCAGGATCAATTCCGAGGCAAATGTTTTGGGAAGAGATGATAATGATGATTGTTTCAAAGAGTGCTATATTGGAAGTAAAGATATCTCTAATCTGGTTAGGAAAGCAGTCCAAGCTGCTGAAGCTGAAGCTAGATCTGCCAATGCACCTGAAGAAGCTGTCAAGGCAGCTGGTGACGCTGCTGCTGAACTTGTTAAAACTGCAGCTTCAGAGGAATTCAAATCCACTAATGATGAAGAAGCTGCTGTTTTAGCTGCTTCAAAAGCTGCATCAACTGTTATTGATGCTGCATCTGCTGTTGAAGTTTCAAGGAGCTCCATCAGCATCAATAAGGAGATTGAGAATGCAGATGTCCAAGACAGAGAATCTGGTGAGGAAGTTGAAGATTACTTCATCCCAGATACTCAATCACTTTTGCAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGCTACTCGGAGAATATGTAGAAGTTCTTGGCCCTGTATTACATGAGAAAGGGGTAGATGTGTGTCTTGCACTTTTGCAACAGAATTCTCAACATCGAGAGGCTTCCAAAGTTGCCCTACTGTTGCCTGATGTCATGAAGCTGATCTGTGCTTTGGCTGCTCATAGGAAGTTTGCTGCACTATTTGTGGACCGTGGGGGCATGGAAAAGCTTCTTGCTGTTCCTAGAATGGCTCAAACTTTCTTTGGCCTTTCTTCTTGTCTATTTACTATCGGTTCTCTGCAGGGGATAATGGAAAGGGTTTGTGCTCTTTCATCAGATGTTGTTTATCATTTGGTTGAGTTGGCTCTCCAGCTCCTTGAATGCAACCAAGACCAAGCTCGGAAGAATGCAGCATTGTTCTTTGCTGCTGCATTTGTCTTTAGAGCAGTTCTTGATGCTTTTGACGCCCAGGATGGATTACAGAAATTACTGGGCCTTCTAAATGATGCTGCTTTGCTAAGATCGGGAGTAAATTCTGGGGCTTTGGGTCTATCCAACGCAGGATCACTTCGAAATGATCGATCGTCTGAGGTGCTGACATCATCTGAGAAGCAGATAGCCTATCATACTTGTGTTGCTTTGCGGCAATACTTCAGAGCTCATCTCCTTTTGTTAGTGGATTCCATTCGTCCAAACAAAAGCAACCGTAGTGCTGCTAGGAATCTTCCAAGTGTAAGGGCAGCATACAAGCCACTTGACATTAGCAATGAAGCAATGGATGCTGTACTCCTGCAATTACAAAAAGATCGGAAGCTGGGTTCTGCATTTGTGAGAACACGTTGGCCAGCAGTTGATAAGTTCTTGGCATGTAATGGGCATATTACTATGCTGGAATTGTGTCAGGCCCCACCTGTGGAACGGTATTTGCATGATTTGCTTCAGTATGCATTGGGTGTTCTTCATATTGTTACATTGGTGCCTAGCAGCCGCAAGATGATTGTAAATGCAACATTAAGTAACAATCGTGTGGGTACAGCAATCATTCTGGATGCTGCAAATATTGCTAGTAATCATGTGGACCCTGAGATAATTCAGCCTGCTTTAAATGTATTAGTCAACCTTGTTTGTCCTCCACCTTCAATCAGTAACAAACCAGCTTTGGTTACACAAGGGCAGCAGTCTGCTTCTGCCCAAACCTCAAATGGTCCTCTGTCAGAGACTAGAGATAGAACTTCTGAACGAAATGTCATAGATCGATCTGTTAATATTTCCAGTCAGACAGATCCGAGGGAGCGGAATGGGGACTCTAGTGCTGTGGATCGAGACAGTTCTGCAGCAGTTAGTACACAAACTTTTAATAGCACTCCACAGACTGCTGTCCTGGCTGCTTCTTCAGGATTGGTTGGAGACCATAGAATATCTCTGGGTGCTGGAGCAGGCTCTGCTGGCCTGGCTGCACAACTGGTACAAGGATATCGTCAAGCAAGAGAGGCTGTTCGCGCTAATAATGGAATAAAGGTTCTTTTGCATCTCCTCCAACCTCGCATATATTCGCCTCCTGCTGCTTTGGACTGCCTTCGTGCTCTAGCATGTCGAGTTCTGCTTGGTTTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTACAGGTTGGGAAGAAGCTGTCAGAACTAATCCGGGATTCAGGCAGCCAGACACATGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAAGCTGCAATTGAGTTAATTGGGATTGTCACTAACTCAGGGCGTGCAAGTACATTAGCAGCTACTGATGCAGCTACTCCTACCTTAAGGCGCATAGAAAGAGCAGCTATTGCTGCTGCCACTCCTATAACATATCACTCGAGGGAACTTTTGCTCCTTATTCATGAACACCTTCAGGCATCTGGATTGTCACAAACTGCTTCTATGTTGCTTAAAGAGGCTCAATTGAAACCTTTGCCATCAGTGGTTGCTCCATCATCTCTTGCACAACAACCTTCCACACAGGAAGCTCCTCCAGTACAACTCCAGTGGCCTTCTGGTCGTGCTCCTGGATTTCTGTCCAACAAATTAAAGCTTAATGTAGGGGATGGGGATTCCAACACAAAGATTGATTCAGCTTTCTCCTCAAAGAAAAAGTCACTGAATTTTTCTTCTTCCTTTGGTTCAAATTCAAGACATCAACTTGTTGATTTTCGGCAGTCATCTGTCCGAAAATTGTTAGGTACTGGTAAAGAGTCTTTAGAAACCGCAGCAGTATTAGAGACTCCATCAGAGCCTTTGGGGAAACATAACATTGATGCTGAATCTCAGTACAAGACTCCAATCATCTTGCCGATGAAACGGAAACTATATGAGTTAAAGGATATAGGAGTGTTGTCATCATCTGGAAAGCGACTATATACTGGGGATCAAGGAATTCGCTCTCCTATTTGTCCAACTCCACATTCGATTCGTAGAAGTAACATGCAGACTGATGCTATTGGGCTTTCTACACCAAGTTCCAACCTGAGAAATCAACAAGGACGTTCTGACTATGTGGATGAGAATCAAAACAGTATGTCAACTCTAGGTCAGGTTACACCATCCTCCCTAGTCATAAATGATCTTCAGCATAACAATTCAGAGCGTATAACATTAGATTCTCTAGTGGTTCAGTATTTGAAGCATCAGCACCGCCAATGCCCAGCTCCTATTACTACTCTTCCTCCACTGTCTCTTTTACACCCTCATGTATGTCCTGAACCCAAGCGAAGCCTTGATGCCCCTTCTAATGTGACAGCTCGCCTTGGTACACGTGAATTTAAACTAATATATGGTGGAGTCCATGGGAATCGCAGGGATCGTCAATTTGTTTATAGCAGATTCAGACCATGGCGCACCTGTCGTGATGATGCTGGTGCCTTACTAACTTGCATATCATTTGTTGGGGACTCTTCTCATATTGCTGTTGGGAGCCACAATGGAGAGCTCAAACTTTTTGATGCTAACAACAACAATGCGGTGGAGAGCTTTACCGGTCACCAGTATCCATTGACACTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCTTCAAGCTCCCAAGATGTAAGGTTGTGGGATGCCTCATCAATTTTGAGTGGTACTACCCATTCATTTGAAGGTTGCAAGGCTGCCAGATTTAGCAATGCTGGGAATGTTTTTGCAGCCTTGTCATCAGAATCTTCACAACGGGAAATCCTCTTGTATGATATCCAGACATGTCAGCTAGAGTCTAAGTTGTCAGATACTTCAACAAATTTTACAGGTCGGGGTCATATTTATTCTTTAATCCACTTTAACCCTTCTGACTCAATGCTGCTTTGGAATGGTATCTTATGGGACCGGCGGGTTTCTGGGCCTGTTCATCGCTTTGATCAGTTCACAGACTATGGTGGTGGAGGCTTTCATCCTGCTGGCAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCCGACTGCTTCGCAGTGTACCTTCATTGGATCAAACAGCAATAACATTTAATGCTCATGGCGATGTTATATACGCTATCCTAAGGAGAAATATTGAGGATGTAATGTCAGCAGTCAACACACGACGTGTCAAGCACCCTCTTTTTGCAGCTTTCCGCACTTTGGATGCAGTGAATTATTCTGATATTGCTACTATCCCTGTGGATCGCTGTGTTCTTGATTTCACAACTGAACCAACAGATTCATTTGTTGGGTTGGTTACAATGGATGATCAAGATGAAATGTACGCCTCAGCCAGAATCTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCCGATCCTGATGATGCGGAAAGTGAAGAGGAAGATGAGGATGAGGACGAAGATGCTGATGTAGATCCTCTTTTAGGCCCTGGTTTTGGTGGAGATAGCGAGAGTGATGGTGATGACATAAGTAATGATGATGATAGTATAAGTGAGCTTGATGATGAAGATGGAGATTTCATTACGGATGATGTAGACTTTGAAGGAGGACCTGGCATGCTGGACATTGTGACAGAAGGCGACGAGGATGATGATGATGATAGTGAAGTACTTGGATCTTTTAGTAGTGGCGAAGAAGATTTTGGCTTTGACTATTAA 5877 0.4427 MDDEANRNQGQVPPPPPLAESQSHDGDGEEEDVEEEEEEEEESKKEEEEVIAKANKLMDKITGSPDNPKPTVLHALASILEIQESRYMEENDHASSSNARASHNIGRLGSLIRENDEFFELISSKFLSETRYTTSIRAAAARLLLSCSLTWIYPHVFEEPVLENIKHWVKDENTSLSAEEQNLKRVPGSKEASDSEMLKTYSTGLLAVCLVGGGQVVEDVFTSGLPAKFMRYLRLRVLGETSSSQKDTNSLTESRHASGNTSMRGKDDGRNRFRQVLESSHFDDAKMIDERSSDDRIRERDPDKSVSGLIFQEDSCMDEPPDGLSEGAGICEVGTGGEDRWHCRDIRDVRVKYGDHEDNARDDSSKRRVNCGWGRSREKGRVNEGNVESEPVLSSPGSGSRLVQGKSVKDRNILRNVDIKMVPDSKKSVVRINSEANVLGRDDNDDCFKECYIGSKDISNLVRKAVQAAEAEARSANAPEEAVKAAGDAAAELVKTAASEEFKSTNDEEAAVLAASKAASTVIDAASAVEVSRSSISINKEIENADVQDRESGEEVEDYFIPDTQSLLQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSQHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGMEKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALSSDVVYHLVELALQLLECNQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKLLGLLNDAALLRSGVNSGALGLSNAGSLRNDRSSEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAARNLPSVRAAYKPLDISNEAMDAVLLQLQKDRKLGSAFVRTRWPAVDKFLACNGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGTAIILDAANIASNHVDPEIIQPALNVLVNLVCPPPSISNKPALVTQGQQSASAQTSNGPLSETRDRTSERNVIDRSVNISSQTDPRERNGDSSAVDRDSSAAVSTQTFNSTPQTAVLAASSGLVGDHRISLGAGAGSAGLAAQLVQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTHGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLSQTASMLLKEAQLKPLPSVVAPSSLAQQPSTQEAPPVQLQWPSGRAPGFLSNKLKLNVGDGDSNTKIDSAFSSKKKSLNFSSSFGSNSRHQLVDFRQSSVRKLLGTGKESLETAAVLETPSEPLGKHNIDAESQYKTPIILPMKRKLYELKDIGVLSSSGKRLYTGDQGIRSPICPTPHSIRRSNMQTDAIGLSTPSSNLRNQQGRSDYVDENQNSMSTLGQVTPSSLVINDLQHNNSERITLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKLIYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCISFVGDSSHIAVGSHNGELKLFDANNNNAVESFTGHQYPLTLVQSFVSGETQLLLSSSSQDVRLWDASSILSGTTHSFEGCKAARFSNAGNVFAALSSESSQREILLYDIQTCQLESKLSDTSTNFTGRGHIYSLIHFNPSDSMLLWNGILWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTAITFNAHGDVIYAILRRNIEDVMSAVNTRRVKHPLFAAFRTLDAVNYSDIATIPVDRCVLDFTTEPTDSFVGLVTMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDEDEDADVDPLLGPGFGGDSESDGDDISNDDDSISELDDEDGDFITDDVDFEGGPGMLDIVTEGDEDDDDDSEVLGSFSSGEEDFGFDY. 1959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g03010 1958 SMART Lish 1199 1231 IPR006594 GO:0005515
Seca7g03010 1958 MobiDBLite consensus disorder prediction 958 979 - -
Seca7g03010 1958 Gene3D - 1535 1859 IPR015943 GO:0005515
Seca7g03010 1958 MobiDBLite consensus disorder prediction 243 270 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 284 314 - -
Seca7g03010 1958 PANTHER VPRBP PROTEIN-RELATED 40 1952 IPR033270 GO:0016567
Seca7g03010 1958 SMART WD40_4 1577 1617 IPR001680 GO:0005515
Seca7g03010 1958 SMART WD40_4 1534 1574 IPR001680 GO:0005515
Seca7g03010 1958 SMART WD40_4 1622 1660 IPR001680 GO:0005515
Seca7g03010 1958 MobiDBLite consensus disorder prediction 958 1024 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 388 402 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 284 307 - -
Seca7g03010 1958 SUPERFAMILY ARM repeat 552 1136 IPR016024 -
Seca7g03010 1958 Coils Coil 26 57 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 1858 1878 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 990 1005 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 1844 1958 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 25 45 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 377 405 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 1930 1946 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 1 50 - -
Seca7g03010 1958 MobiDBLite consensus disorder prediction 243 259 - -
Seca7g03010 1958 ProSiteProfiles LIS1 homology (LisH) motif profile. 1199 1231 IPR006594 GO:0005515
Seca7g03010 1958 FunFam DDB1-and CUL4-associated factor homolog 1 1532 1859 - -
Seca7g03010 1958 SUPERFAMILY WD40 repeat-like 1536 1768 IPR036322 GO:0005515
Seca7g03010 1958 MobiDBLite consensus disorder prediction 1892 1917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g03010 Seca-Chr7 86320906 86332343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g03010 1561 1767 U-box Gene Family AT1G04510 24.779 4.88e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g03010 K11789 - gmx:100800133 2736.06