Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02994 ATGGATACCAATGGCAGCTTAAGGGTGGCAAGTTTATGGCCCTCAATGCGTGCTATCTCTCAGCAGTTATCACCTATTTCGGATTGTTCAGGAATTGAACTTCTCCAAGCTGACACGTTTGATCTTCATTGCTTTCAATCACTGACAGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTATGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGTATAAAACAGTTTCTCCTCACTAGGTCTCTATTATGTATATAG 306 0.4477 MDTNGSLRVASLWPSMRAISQQLSPISDCSGIELLQADTFDLHCFQSLTGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGIKQFLLTRSLLCI. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02994 101 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 58 IPR007233 GO:0016192|GO:0030008
Seca7g02994 101 Pfam LSD1 zinc finger 57 81 IPR005735 -
Seca7g02994 101 Gene3D - 1 86 - -
Seca7g02994 101 Pfam Sybindin-like family 1 56 IPR007233 GO:0016192|GO:0030008
Seca7g02994 101 NCBIfam zinc finger domain, LSD1 subclass 54 84 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02994 Seca-Chr7 85889804 85890531 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca7g02994 Sybindin 1.3e-12 CL0431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02994 K20303 - zju:107407503 96.2857