Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02936 ATGGATGAATATTCTGGTAAAAGAGGCATTGATGGGGTGGTAGTCCCTAGAAAAGTGATGGGCCTTGAGTTTAGAAATACTGCTAATACTAGAGATCGAAATGGTCAAATTTGCAGGCAACTGGGTTGCAGTAGTAAAGCCAACACTTCTAAAGATGCTCATGCCAGATCTTCAGAAAAAGGTAAGTCTTTGAGGACTTCTTCAAGTGGCAAGGAGGCAATTGGAAGTTCCTCTAGAATGACTAGTAATCCAGGAAAACCCCTTATGGAGCCTCGCAAAACATTATCCTCTCAGCTTGAAACAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGATATTTCAGAGCTCACTCCTCTACCAGAAGAATTTCCGAGAGGGCTTCGATCCGAAGGGGAAAGCACAGAGTCTAGTAATAAAATCCGGATGGAAGTAGGAAGCTCTAGTGTAGTATCAAATACAAGATCTCAAAGGAATTTCCATCAAAGGCCTGGATTGCGGGAGCGGGAAGGTAAAAGCACTGGTCCAGTGACACGTGCTGTTACTAGCAGCAGGTATGGGCTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCATCTGGTTGTTCTTCATCAGATTCAACCCTTAATAGAAGGAAGGGTATAATAAAAAAGAAAAACTGTGAAGGGGAAAGTAGTTCCACTGCAGGGAAGAAGATGACTGGGTCTTCACTTGAAGGACTGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATACAAGAAGGGCTAGAAATGTTCCTTCTCATAGGGACAGCAGCACAGCAACGGTTAGAGGTCAAAGATCAATTAGTGGTCATGCCAGGGGAAGATTTTCTAGCCAAGGAAATGAAAACCCCATGGTAACCAATGAGTCCCCTGTTATGGTACCTTTTTCACCTCATTCTGGAAATCTTACTGCTCCTGGCATTTCATACCATACTTCTGTGGAGACCCCTTTAGGCCATCCAAGCTCTTATAGTAGTAGACCAGGTACTAGCAGTGAGCTGTTATGTGGTGTTATGCCTGTATCTCGTGCAGAATATGGCATCACTCATTCTCTAATGAATCGGGATAGCTTTCGGCGCTACAACATGGATGGTATTGCAGAGGTATTATTTGCACTTGAGAGGATTGAACAAGATGAAGAGCTAACCCATGAGCAAATTCTTTTACTAGAGACCAACTTGTTCCTCAATGGACTAAGCTTCTTTGATCATCATAGAGACATGCGGTTGGATATTGATAACATGTCATATGAGGAGCTTTTAGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGAACTTTCAGAGTGCCTTAAGAGAAGTATATATCAGCCTGCACCTTCAGATGATGCAGCTGAGAAATTTAATGAGGATAAGGAAGATATCAAATGCAGCATTTGCCAGGAAGAATACATTGTTGGAGATGAAGTTGGGAGACTGCAATGCGAGCATAAATTTCATGTGGTTTGTATACAGGAGTGGCTGGGGCTGAAGAACTGGTGCCCTATTTGCAAAGAATCAGCTGCACTGTCCAATTCATCTTCAACCCATTGA 1605 0.4305 MDEYSGKRGIDGVVVPRKVMGLEFRNTANTRDRNGQICRQLGCSSKANTSKDAHARSSEKGKSLRTSSSGKEAIGSSSRMTSNPGKPLMEPRKTLSSQLETDSSETSSVQDEPDISELTPLPEEFPRGLRSEGESTESSNKIRMEVGSSSVVSNTRSQRNFHQRPGLREREGKSTGPVTRAVTSSRYGLRNLRCNSISDVIPSGCSSSDSTLNRRKGIIKKKNCEGESSSTAGKKMTGSSLEGLNSGSRNGISISDTRRARNVPSHRDSSTATVRGQRSISGHARGRFSSQGNENPMVTNESPVMVPFSPHSGNLTAPGISYHTSVETPLGHPSSYSSRPGTSSELLCGVMPVSRAEYGITHSLMNRDSFRRYNMDGIAEVLFALERIEQDEELTHEQILLLETNLFLNGLSFFDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEELSECLKRSIYQPAPSDDAAEKFNEDKEDIKCSICQEEYIVGDEVGRLQCEHKFHVVCIQEWLGLKNWCPICKESAALSNSSSTH. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02936 534 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 441 526 IPR013083 -
Seca7g02936 534 Pfam Ring finger domain 480 522 IPR001841 -
Seca7g02936 534 MobiDBLite consensus disorder prediction 62 84 - -
Seca7g02936 534 MobiDBLite consensus disorder prediction 224 259 - -
Seca7g02936 534 FunFam E3 ubiquitin-protein ligase arkadia 443 527 - -
Seca7g02936 534 MobiDBLite consensus disorder prediction 27 51 - -
Seca7g02936 534 SUPERFAMILY RING/U-box 475 525 - -
Seca7g02936 534 SMART ring_2 481 521 IPR001841 -
Seca7g02936 534 MobiDBLite consensus disorder prediction 1 181 - -
Seca7g02936 534 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Seca7g02936 534 MobiDBLite consensus disorder prediction 266 301 - -
Seca7g02936 534 MobiDBLite consensus disorder prediction 140 161 - -
Seca7g02936 534 MobiDBLite consensus disorder prediction 94 114 - -
Seca7g02936 534 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 65 526 IPR045191 GO:0061630
Seca7g02936 534 MobiDBLite consensus disorder prediction 223 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02936 Seca-Chr7 83786187 83790589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02936 378 525 C3H Transcription Factor Family AT2G15530 41.892 3.47e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02936 - - gmx:100812055 752.666