Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02910 ATGTCTCGTGTGTATGTGGGTAACCTGGATTCGAGAGTTACAGAGAGGGACCTTGAAGATGAATTCCGTGTTTTCGGAGTTATTCGAAGTGTTTGGGTTGCACGGAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATTCGCGAATTAGATGGGTTTTCCTCAACTACATATTTAAGTCTTCTTTTTCGTTTGAGGAAGTCGTAG 231 0.4329 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGFSSTTYLSLLFRLRKS. 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02910 76 SMART rrm1_1 3 76 IPR000504 GO:0003723
Seca7g02910 76 FunFam Serine/arginine-rich splicing factor 7 2 66 - -
Seca7g02910 76 Gene3D - 2 65 IPR012677 -
Seca7g02910 76 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 60 IPR000504 GO:0003723
Seca7g02910 76 SUPERFAMILY RNA-binding domain, RBD 3 61 IPR035979 GO:0003676
Seca7g02910 76 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 61 - -
Seca7g02910 76 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02910 Seca-Chr7 82638063 82639194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02910 2 60 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 5.72e-06 40.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02910 K12896 - gmx:100790689 124.79