Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02893 ATGCTTTTTATGTTGGCCAATAGTTTTGTGCCATCTAGTGGTGACACAACTGGTCAAATTTTGATGAGGTTTAGAAGCTTTTTGTCCAATGACAATGCTTTAAATAACTGGGGTGATGAGTCTAATTTGTGCAACTGGGCTGGTTTATTATGCACCAAGCAGGTATTTTATGGGTTGAGACTAGAGAATATGGAACTAGGTGGGAAGGTTGATGTAGACACCTTGTTGGAATTGTCAAATTTGGTCAGTTTTAGTGTCATTAACAACACATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAGTTAAGAGCATTGTTTCTGTCAAATAACAATTTCTCTGGTGAAATTCCGGATGATGCTTTTGAGGGCATGAAAAGGCTTAAAAGGGTATTCTTGGCAGAAAATAGGTTCACGGGTCATATACCTAAGTCCCTTGCTAACTTGCCTAGACTTTTGGATTTGGACTTGCATAAGAATAGTTTTGGAGGCAACATACCAGAGTTTCAACAAAAGGATTTCAGAGTATTTAATTTATCAAACAACCAATTGGAGGGTCCAATACCAGAAAGCTTAAGCAACATGGATCCAAGCTCATTTGCTGGTAACAAAGGTTTATGTGGAAAACCTTTAAGCAGCCCCTGCAACAACAACACCACAAAATCTCAGGTGCTTCCCATCCCCACTTCTCCACCTGAAGGAAAGGGAAAGAAACACCACATCCTTATAATTGTTATTGTTGTGGTGTCTGTGGTTGTCTTGGCTTCAATAGCAGCACTTCTGTTTATCCATAACCGCCAGAGACGAAGCTTGCAACCTTTAATAGGCCAGCAGGTGAATTCCCATGACAGTAAAGGTTTCAGGGAGGCACAATCCATTGATGTGATAGGTGATTTCAAGAAGGGTGAGAATGGTGATTTGAACTTTGTTAGGGAAGACAGAGGGGGTTTTGATTTGCAAGACTTGCTTAGGGCCTCAGCTGAGGTTCTTGGCAGTGGAAGTTTTGGATCCACCTATAAGGCTATGGTTTTGAATGGACCAGCTGTGGTTGTGAAGAGATTTAGGCACATGAACAGAGTTGGGAAACAAGATTTCTTTGAGCACATGAGGAAGCTTGGAAGTTTGACACATCCTAATCTACTCCCTCTTGTTGCATTCTACTACAGGAAAGAAGAGAAGTTTTTGGTTTATGACTTTGGTGAAAATGGCAGCTTAGCCAGTCATCTACATGGTAGAAATGGTACTGTGCTAAACTGGTCAAGTCGTTTGAAAATCATAAAAGGAGTAGCCAGGGGTTTAGCATACCTCTACAGAGAGTTCCCTGGACAAAACCTACCTCATGGCCATCTTAAATCCTCCAATGTGGTATTAGACCATTCATTTGAGCCACGTTTAACAGAGTATGGACTTGTGCCAGTGATGAACAAGAGCCATGCTCAGCAGTTCATGGCAGGCTACAAGTCCCCAGAGGTGACCCAGTTTGACAGACCCAATGAGAAGACAGATGTATGGTGTTTGGGGATCCTCATACTGGAATTGTTGACAGGGAGGTTCCCAGCAAACTATCTAAGACATGGGAAGGGTGAAAATGCAGATTTGGCAACATGGGTTAACTCAGTTGTTAGGGAAGAGTGGACTGGTGAGGTGTTTGATAAAGATATATTGGGTACAAGGAATGGAGAGGGGGAGATGCTGAAGCTGTTGAGGATTGGGATGTATTGCTGTGAATGGAGTTTGGAGAGTAGGTGGGATTGGAGAGAGGCAGTGGCAAGGATTGAGGAGTTGAAGGAGAAAGATAGTGATGACGAATTTTCTTCTTATGTTAGTGATGGAGATTTGTACTGA 1848 0.4226 MLFMLANSFVPSSGDTTGQILMRFRSFLSNDNALNNWGDESNLCNWAGLLCTKQVFYGLRLENMELGGKVDVDTLLELSNLVSFSVINNTFEGPMPEFKKLVKLRALFLSNNNFSGEIPDDAFEGMKRLKRVFLAENRFTGHIPKSLANLPRLLDLDLHKNSFGGNIPEFQQKDFRVFNLSNNQLEGPIPESLSNMDPSSFAGNKGLCGKPLSSPCNNNTTKSQVLPIPTSPPEGKGKKHHILIIVIVVVSVVVLASIAALLFIHNRQRRSLQPLIGQQVNSHDSKGFREAQSIDVIGDFKKGENGDLNFVREDRGGFDLQDLLRASAEVLGSGSFGSTYKAMVLNGPAVVVKRFRHMNRVGKQDFFEHMRKLGSLTHPNLLPLVAFYYRKEEKFLVYDFGENGSLASHLHGRNGTVLNWSSRLKIIKGVARGLAYLYREFPGQNLPHGHLKSSNVVLDHSFEPRLTEYGLVPVMNKSHAQQFMAGYKSPEVTQFDRPNEKTDVWCLGILILELLTGRFPANYLRHGKGENADLATWVNSVVREEWTGEVFDKDILGTRNGEGEMLKLLRIGMYCCEWSLESRWDWREAVARIEELKEKDSDDEFSSYVSDGDLY. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02893 615 FunFam pollen receptor-like kinase 1 296 400 - -
Seca7g02893 615 Gene3D Phosphorylase Kinase; domain 1 296 400 - -
Seca7g02893 615 SUPERFAMILY L domain-like 37 201 - -
Seca7g02893 615 ProSiteProfiles Protein kinase domain profile. 325 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02893 615 Gene3D Transferase(Phosphotransferase) domain 1 402 612 - -
Seca7g02893 615 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 72 167 - -
Seca7g02893 615 SUPERFAMILY Protein kinase-like (PK-like) 329 597 IPR011009 -
Seca7g02893 615 ProSitePatterns Protein kinases ATP-binding region signature. 331 363 IPR017441 GO:0005524
Seca7g02893 615 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 600 IPR046959 -
Seca7g02893 615 FunFam Pollen receptor-like kinase 1 402 607 - -
Seca7g02893 615 Gene3D Ribonuclease Inhibitor 15 173 IPR032675 -
Seca7g02893 615 Pfam Protein kinase domain 328 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02893 615 Pfam Leucine rich repeat N-terminal domain 18 51 IPR013210 -
Seca7g02893 615 Gene3D Ribonuclease Inhibitor 174 216 IPR032675 -
Seca7g02893 615 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02893 Seca-Chr7 82059951 82063082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02893 10 613 Receptor kinase-like Gene Family AT5G35390 47.302 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g02893 Pkinase 4.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02893 - - gmx:100781593 952.584