Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02887 ATGGCAAGCCCTGTTGGTGTTGGATCTAAGACTGAAGCTGTTATGAATGTGGGAAAATCCAAAGGAGGAAACGACAAAGGATTCAAAGGTGGAGGAAAGAAACCTATAAGAGATAATGGCAAAGCCCCAGTGGTTGCTGAAGCATCATCAAGTAACAATAACAATCCAGGAACAAGTGGAACTACTCCCAACCTGATCATGGAACTGCAATATTATTTCCATCTTAGGCAATTCACCTTTCATGAGCTCAAGTTGGCTACTAAGAATTTCAAAGCTGGGAATTTTCTTGTTGCAGTCAAGACCCTCAACATAGAAGGAAATCAGGGTCACAAAGAATGGGTGGCTGAAGTGAGCAATCTTGGTGCCCTGGAACACCTCAACCTTGTTAAATTGCTTGGATACTGCATAGAAGGGGATGACAGGGTTTTGGCGTATGCGTTTATGCCTAGAGTAAGTTTAGAACATCATCTCTTTAAGAGAGGAGAATTGCCCCTTCCATGGTCTATCAGACTGAAAATTTTGATTGGTGTTGCAATGGGCCTTATGTTTCTGCATGAGGAAGATACAGAGCCATTAATTTATCGAGACTTCAGTACTTCTAACATCCTATTGGATTCAGACTACAATGAGAAACTTTCTGATTTTGGGTTGGTGAAAGATGCCCCAATGGGTGACTTGACTCATGTGTCAACTAGAGTGATGGGAACTCAAGGGTATGCACCCCTGAGTATGTGA 735 0.4231 MASPVGVGSKTEAVMNVGKSKGGNDKGFKGGGKKPIRDNGKAPVVAEASSSNNNNPGTSGTTPNLIMELQYYFHLRQFTFHELKLATKNFKAGNFLVAVKTLNIEGNQGHKEWVAEVSNLGALEHLNLVKLLGYCIEGDDRVLAYAFMPRVSLEHHLFKRGELPLPWSIRLKILIGVAMGLMFLHEEDTEPLIYRDFSTSNILLDSDYNEKLSDFGLVKDAPMGDLTHVSTRVMGTQGYAPLSM. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02887 244 MobiDBLite consensus disorder prediction 45 60 - -
Seca7g02887 244 Gene3D Phosphorylase Kinase; domain 1 86 148 - -
Seca7g02887 244 ProSitePatterns Tyrosine protein kinases specific active-site signature. 192 204 IPR008266 GO:0004672|GO:0006468
Seca7g02887 244 SMART tyrkin_6 78 244 IPR020635 GO:0004713|GO:0006468
Seca7g02887 244 PANTHER OS01G0588500 PROTEIN-RELATED 59 241 - -
Seca7g02887 244 ProSiteProfiles Protein kinase domain profile. 69 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02887 244 Pfam Protein tyrosine and serine/threonine kinase 91 222 IPR001245 GO:0004672|GO:0006468
Seca7g02887 244 SUPERFAMILY Protein kinase-like (PK-like) 59 240 IPR011009 -
Seca7g02887 244 Gene3D Transferase(Phosphotransferase) domain 1 149 244 - -
Seca7g02887 244 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02887 Seca-Chr7 81933820 81935286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02887 24 240 Glycoside Hydrolase AT3G07070 41.250 3.45e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca7g02887 PK_Tyr_Ser-Thr 2.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02887 - - egr:104422555 243.047