Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02878 ATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCATCAATATTTGCTACCAGGATTTTTGAGATGATTGACAGAAAGCCAACTATAAACTCTAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAGGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACACTTATTCTCCAAGGACTCAATCTAAAAGTGCAGGCAGGACTGGTAAACCAAGAGCCAATTCTCTTTGCAACATCCATAAAGGAGAACATTCTATTTGGCAAGGAAGGAGCCTCATTGGAAACTGTTACAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAACTTCTAGAGACTACAATCATCATAGCCCATCGCCTATCTACAATTCGTAAGGCAGATTCAATAGTAGTTCTTCAATCAGGAAGAGTGGTTGAATGTGGTTCCCATGATGAACTACTTCAACTGAACAATGGACAAGGAGGGGCTTACAGCAAAATGCTACAACTACAACAAGCAACAACTCAAAATGAAAATGCACTTCATCAAATAGACAAAAGCCCCCATGTAATGGAAAATCTAAGAAGTCCAACTCATCATGCATTTAGCCCTGCACAACCATTTAGCCCCATATATTCAATTAGTTTTATAGGGTCCAGCTTTGATGACTACAACATTGAAAAATCAGAGAAATCTTCCCATTCAAACTTCTCCCAATGGCGTTTACTACAAATGAATGCCCCTGAGTGGAAGCATGCTTTGCTTGGATGTTTAGGTGCCATTGGCTCAGGAATATGCCAGCCAATTTATTCCTATTGCTTGGGAATAGTTGCATCTGTTTACTTTATAAAAGATAGCTCTCAAATCAAATCACAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATAGCTGTTGTAAATTTCATCTCAGGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTGAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCTCTTGTTGCAGAAAGAATTTCATTGTTAGTTCAGATTTCTGTCACAGCTACACTAGCTTTTGTACTTGGTTTAATTGTTTCATGGAGGGTGGCTATTGTTATGATTGCTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGTATGTCAGGCAAAGCAAGAAGTGCTCAAAGAGAGGGTAGTCAATTAGCAATCGAAGCTACTATTAACCATAGGACTATAGCTAAAAGGATGCTAAATTTGTTCAGAACTGCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAGTGTCACAATTTATAACAACAGCATCTATAACTTTGACTTTTTGGTATGGTATGGTGGCAGGTTATTGA 1542 0.3898 MSALPNLGFILEASIFATRIFEMIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGLVNQEPILFATSIKENILFGKEGASLETVTSAAKAANAHDFIIKLPNGYETQLLETTIIIAHRLSTIRKADSIVVLQSGRVVECGSHDELLQLNNGQGGAYSKMLQLQQATTQNENALHQIDKSPHVMENLRSPTHHAFSPAQPFSPIYSISFIGSSFDDYNIEKSEKSSHSNFSQWRLLQMNAPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDSSQIKSQIRLYSSIFCCIAVVNFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERISLLVQISVTATLAFVLGLIVSWRVAIVMIAMQPLIIACLYSKSILMKSMSGKARSAQREGSQLAIEATINHRTIAKRMLNLFRTAMEGPKKESIKQSWISGSILSVSQFITTASITLTFWYGMVAGY. 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02878 513 Gene3D ABC transporter type 1, transmembrane domain 198 509 IPR036640 GO:0005524|GO:0016020
Seca7g02878 513 CDD ABC_6TM_Pgp_ABCB1_D2_like 255 510 - -
Seca7g02878 513 Gene3D - 75 127 IPR027417 -
Seca7g02878 513 Gene3D - 37 74 IPR027417 -
Seca7g02878 513 Gene3D - 131 197 IPR027417 -
Seca7g02878 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 183 IPR027417 -
Seca7g02878 513 Pfam ABC transporter transmembrane region 267 510 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g02878 513 SUPERFAMILY ABC transporter transmembrane region 253 509 IPR036640 GO:0005524|GO:0016020
Seca7g02878 513 PANTHER ABC TRANSPORTER B FAMILY 131 278 IPR039421 -
Seca7g02878 513 Gene3D ABC transporter type 1, transmembrane domain 2 36 IPR036640 GO:0005524|GO:0016020
Seca7g02878 513 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 266 513 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02878 Seca-Chr7 81781084 81783085 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02878 267 508 Calmodulin-binding Proteins AT2G36910 21.116 1.48e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02878 K05658 - gmx:100804664 745.347