Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02873 ATGGAACAATTATTCTTACTAGTTCAGCAAACATGTGATCATCCTTTTAATGAGAGGTTGAAGGAAAGTTATAAGATTGTGTGGCTTCCCCTTCCATCTTCTGATACATGGACTGATGCTGAAGAGGGTAGTTTTATTTTTCTATCAGATTTCTTGCCTTGGTATGCTGTTCAGAAACCAAGGTTACTTAGCCCAACAGTGGTGAAGTACATCCGGGAACAATGGAACTACAAGGATGATCCCATCATGGTAACACTGGATTCCAATGGGAAGGTCACAAATTTCAAAGCTCTTGGTATGATCAAGATTTGGGGAGCCCAAGCTTATCCCTTTTCAGCTTCAAAAGAGGCAGAGCTGTGGCAAAACCAGAACTTGACAATGCAACCTTTGCTGGTTGATATCAATCCTCTCCTTGCTTACTGGCTTACCCATCAGTGCAAAAAACTTGTGGACCTGTTAACCTTGCTCGCATCACAGGGGTCTCTGATGAGTGCACTCCCAAATCTTGCTTTCATATTAGAGGCATCAATATCTGCTACCAGGATTTTTGAGATGATTGACAGAAAGCCAACTATAAACTCTAATAAAGAAAAAGGAAGGATCTTAAAACATGCAAGAGGAGAGATTACATTTAAGGAGGTTGACTTTAGTTACCCTTCAAGGCCAGATACATTGATTCTCCAAGGACTGAATCTAAAAGTGCAGGCAGGTAAAACAGTAGGCCTAGTTGGAGGGAGTGGTTCTGGAAAATCTACAATCATCTCTTTGCTTGAAAGATTTTATGATCCTGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGAAGCTGTTACAAGTGCAGCAAAGGCAGCAAATGCACATGATTTCATTATTAAACTTCCTAATGGATATGAAACTCAAGTAGGACAACTTGGAGCTCAATTATCTGGAGGGCAAAGCAAAGGATTGAGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCTCTTGTTGCAGAAAGAATTTCATTGTTAGTTCAGATTTCTGTCACAGCTACACTAGCTTTTGTACTTGGTTTAATTGTTTCATGGAGGGTGGCTATTGTTATGATTGCTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGTATGTCAGGCAAAGCAAGAAGTGCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCTACTATTAACCATAGGACTATAGCTAAAAGGATGCTAAATTTGTTCAGAACTGCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAGTGTCACAATTTATAACAACAGCATCTATAACTTTGACTTTTTGGTATGGTGGCAGGTTATTGAATCAAGGGTTAGTGGAATCAAAACAACTTTTGCAATTTTTCCTCATTTTGATGGGCACTGGTAAGCAAATTGCAGATAGAGGAAGCATGACATCTGACATAGCTAAAAGTGGAAGAACTATGAATTCAGTATTTGCAATACTGGATAGGAAAAGTGAGATTGAACCTGAAGATCCTACACATAAAATTAAAATTTCAATGAGAGATGGGTATGATACTTATTGTGGAGAAAGAGGAGTGCAGTTGTCAGGAGGGCAGAAGCAGAGGATAGCAATTGCTAGAGCAATGCTTAAGAACCCATCAATCCTTCTCTTAGATGAGGCAACAAGTGCTCTAGACAGTGTGTCAGAGAATCTAGTGCACGAGGCGCTGGAGAAAATGATGGTTGGAAGAACATGCGTAGTTATAGCTCACCGTTTGTCAACAATACAAAGTGCTGACTCCATAGCTGTGATTAAAAATGGGAAGGTGGTGGAACAAGGATCCCACTCTGAGTTATTGAATGTTGGATCAAATGGGGCTTATTACTCCTTAATTAGGCTACAACATGGTCACTCAACTTGA 2085 0.4019 MEQLFLLVQQTCDHPFNERLKESYKIVWLPLPSSDTWTDAEEGSFIFLSDFLPWYAVQKPRLLSPTVVKYIREQWNYKDDPIMVTLDSNGKVTNFKALGMIKIWGAQAYPFSASKEAELWQNQNLTMQPLLVDINPLLAYWLTHQCKKLVDLLTLLASQGSLMSALPNLAFILEASISATRIFEMIDRKPTINSNKEKGRILKHARGEITFKEVDFSYPSRPDTLILQGLNLKVQAGKTVGLVGGSGSGKSTIISLLERFYDPENILFGKEGASMEAVTSAAKAANAHDFIIKLPNGYETQVGQLGAQLSGGQSKGLSLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERISLLVQISVTATLAFVLGLIVSWRVAIVMIAMQPLIIACLYSKSILMKSMSGKARSAQREGSQLAMEATINHRTIAKRMLNLFRTAMEGPKKESIKQSWISGSILSVSQFITTASITLTFWYGGRLLNQGLVESKQLLQFFLILMGTGKQIADRGSMTSDIAKSGRTMNSVFAILDRKSEIEPEDPTHKIKISMRDGYDTYCGERGVQLSGGQKQRIAIARAMLKNPSILLLDEATSALDSVSENLVHEALEKMMVGRTCVVIAHRLSTIQSADSIAVIKNGKVVEQGSHSELLNVGSNGAYYSLIRLQHGHST. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02873 694 SMART AAA_5 236 669 IPR003593 GO:0016887
Seca7g02873 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 568 689 IPR027417 -
Seca7g02873 694 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 317 543 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g02873 694 Pfam ABC transporter 571 617 IPR003439 GO:0005524
Seca7g02873 694 Pfam ABC transporter transmembrane region 317 525 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca7g02873 694 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 319 IPR027417 -
Seca7g02873 694 CDD ABC_6TM_Pgp_ABCB1_D2_like 318 561 - -
Seca7g02873 694 Gene3D - 573 690 IPR027417 -
Seca7g02873 694 Gene3D - 199 264 IPR027417 -
Seca7g02873 694 Gene3D - 265 313 IPR027417 -
Seca7g02873 694 Pfam ABC transporter 227 265 IPR003439 GO:0005524
Seca7g02873 694 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 264 314 IPR039421 -
Seca7g02873 694 SUPERFAMILY ABC transporter transmembrane region 317 563 IPR036640 GO:0005524|GO:0016020
Seca7g02873 694 Gene3D ABC transporter type 1, transmembrane domain 153 198 IPR036640 GO:0005524|GO:0016020
Seca7g02873 694 Gene3D ABC transporter type 1, transmembrane domain 319 544 IPR036640 GO:0005524|GO:0016020
Seca7g02873 694 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 209 686 IPR003439 GO:0005524
Seca7g02873 694 ProSitePatterns ABC transporters family signature. 589 603 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02873 Seca-Chr7 81740205 81744451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02873 568 694 Calmodulin-binding Proteins AT2G36910 64.062 2.31e-43 167