Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02872 ATGGAAATTGAAAGTCTGCCAAATTGGTTTGATGAAAAGATGTACAGCACAGAATGTACTAGTGAAGAGAACATTGTCCTTGATGTGATGAAGCACTGGGATGAATTTGAAGAAGAAATGACTAAGATAGATGAACTTGTAGAAGAAATGACTAAGATAGAAGCTGCGATGAAGCACTACGATGAATTTGTAGAAGAAATGACTGAGATAGAAGCTGCAGTAGTTCCTGGATATCCGACCTCTTCTTTATGCACGGAGATGGTTGACAACCTACATGGTCATGATGGATGCAAAAAGAGTCCTGCAACTGCCAAAGGTTCTGATCAGGAGAGGAAGAAAGTGGTTCGTTGGACAAAAGAGGAGCATGAAGTGGGACTTGAGAACTATGGCAAAGGGGATTGGAAAAATATAGCTCGCTATTCAGTAAGGACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTCCTAAGGCAAAAGCTTTCCGGAGGGAAAGATAATAAAATGAGGTCTAGTATCCATGATATCACCACTGATAATCTTACAGAACCTACAACTAATTCAGGTCAAGACAAGCCTCTTTTGTTCAATGAGTCTCTCATGCCAATTGTGCAACCAGAAGGGATTAATCACCTCATTGAGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAGGAGCCACTCATAGAGGTTTTCAATCCAAATTATGAGTCTCTTATAACAAATGTGCAACCAGAAGGGATTAATCACCTCAATGAAGAGCCACTCATGGAGGTTTTCAATCCAAATTATGAGTCTCTCATGACAAATGTGCAACCAGAAGGGATTAATCACCACGATGTGGAGCCACTCATGGAGGTTTTCAATCCAAATTATGATGAAATGTTCATGTTTCCCTCATCTGATATCTATTCCGAGACCCTCAAGTTTCAAGGTCAGCAGGATCTAGACAAATGTCTTTTTCATCATGCTTATGCCCAGCAAAATGCTCAAGGTTTCGGAACCACTTCTAATGACTTCAATAAGGACGCTGTTTTTGGGTTTTGGTGA 1107 0.4074 MEIESLPNWFDEKMYSTECTSEENIVLDVMKHWDEFEEEMTKIDELVEEMTKIEAAMKHYDEFVEEMTEIEAAVVPGYPTSSLCTEMVDNLHGHDGCKKSPATAKGSDQERKKVVRWTKEEHEVGLENYGKGDWKNIARYSVRTKTPTQVASHAQKYFLRQKLSGGKDNKMRSSIHDITTDNLTEPTTNSGQDKPLLFNESLMPIVQPEGINHLIEEPLMEVFNPNYESLMTNVQPEGINHLNEEPLIEVFNPNYESLITNVQPEGINHLNEEPLMEVFNPNYESLMTNVQPEGINHHDVEPLMEVFNPNYDEMFMFPSSDIYSETLKFQGQQDLDKCLFHHAYAQQNAQGFGTTSNDFNKDAVFGFW. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02872 368 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 37 249 IPR043363 -
Seca7g02872 368 CDD SANT 116 158 IPR001005 -
Seca7g02872 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 162 IPR017930 -
Seca7g02872 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 161 IPR006447 GO:0003677
Seca7g02872 368 Pfam Myb-like DNA-binding domain 116 158 IPR001005 -
Seca7g02872 368 SUPERFAMILY Homeodomain-like 111 162 IPR009057 -
Seca7g02872 368 Coils Coil 36 56 - -
Seca7g02872 368 Gene3D - 115 163 - -
Seca7g02872 368 SMART sant 113 160 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02872 Seca-Chr7 81737195 81738393 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca7g02872 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02872 - - ccaj:109813886 209.92