Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02839 ATGGCAGCGTTGTATGAACCTGTTAGCAGCATCTTTCCTGGTAGGCAAAATTGGAGGTTGAAAGTTAAAGTTGTCCGAGTGTGGGAGATGTTTCCAATTGATGAACCAACTAGGACTTTCTCAATCGAAATGGTTTTGGTTGATCAGATGGGGGGACGGATTCAGGTGTCAATTTGCAAGCCAATGATGAGAAGGTTCAGTGGCAGTGTCATTGAGGGGGAGGCCTACAAGATGCATTATTTTGGAGTTGTTCGTAATCTGGGTTCATATAGGGCCACGAAGCATGAGTACAAATTGATCTTTCATCCTAGAACAAGGGTGATCAGGTGCGAGTCTGCTAGCATACCATTGCATGGCTTAACACTGATGAACACTGAGGATTTGATGAAAACTAATGGGCAAAGTGACTATCTCGTGGATACGGTTGGTGTTCTAACTGCCATATCTGCGGAGAAACGTTCATTTCGTGATGGGAGGATGACAAGGGTAATGCAGATGGAGTTATCTGATGATAAGGGTAAGGTTCAGTGCGCTATGTTTGGTAATTACGTTGACATTGTTGGTGATCTGTTACGAGACATGGGACCTGAGTTACCTGTGTTGGTAGTTATGTTTGCCAAAGTGAAACTCTATAAAGGGGAGGTGGGCTTGCAGAATGTTCTGAACACCACCAAAGTTCTTTGCAATCCTCTTATCCCTGAATTAGAAGACTTCCGTAATAGGGTTGCTGCCCATGGCATTGACATTATGGCCCCAATGGGTGTTATACAAGATGAGTATCATAGTATTCCCCCTAAAGATGAGTTTCTATCTTCGCATCCAAGGAAGACTGTTAAACAGCTCCATAACACAGAAGAGGAGGGTTTATTCATCGTGTGTGCCTCAATAGTTACAGTTCTGGGTGGTGGAAACTGGTGGTATGCTGCTTGCAAGTGTCATCGCGCAGTTACTATGGATGGGGAAAGATATTACTGCTCCTCTTGTGGCATGCATGTTCATGATGTTTCTTCTAGGTATAAGTTGAAACTTGAAGTCTATGATGGAGAGGACACAACTGCCTTTGTCCTATTTGATGCTGATGCTGAGGTCTTGATTGGGCGCAATTGTGCAGCTGTGTTGTCTGACATGAAGGATAACCCATCTGAAGAGTTTCCTCCAGAGTTTAACAATGTAGCTGGTAAGGAGGTGCTCTTTAAAGTAGAGAAAGGTGCTGATTATGCATTTAAGTTTGATGACTCTTTTAAAGTGAGGAAGATATGCTTGGATGTCACTATCATTGACCTTTTCAAGCAAGACCTTAATGTAGCGACACCAGAAGCTAGGATATTTCCAGTTCCATTTCCTTCTCTAGATGATGACGCTGAGGAAAACAATGATTCTGGTGCTGAAAAGAAACCCAATGGTGGTGATAAATGTGTTGAACTCAGTCCCGTGTCGGTTGATGATGTACTTGCTGACTCTGTTGTTTGTTATGCTTTGAATGAGTCTGTTACAAGTGACTGTACCAAGGGGCGAGGAAAGGGGGGAAGAAACTCAAGATTAAGGAGGTGA 1551 0.4333 MAALYEPVSSIFPGRQNWRLKVKVVRVWEMFPIDEPTRTFSIEMVLVDQMGGRIQVSICKPMMRRFSGSVIEGEAYKMHYFGVVRNLGSYRATKHEYKLIFHPRTRVIRCESASIPLHGLTLMNTEDLMKTNGQSDYLVDTVGVLTAISAEKRSFRDGRMTRVMQMELSDDKGKVQCAMFGNYVDIVGDLLRDMGPELPVLVVMFAKVKLYKGEVGLQNVLNTTKVLCNPLIPELEDFRNRVAAHGIDIMAPMGVIQDEYHSIPPKDEFLSSHPRKTVKQLHNTEEEGLFIVCASIVTVLGGGNWWYAACKCHRAVTMDGERYYCSSCGMHVHDVSSRYKLKLEVYDGEDTTAFVLFDADAEVLIGRNCAAVLSDMKDNPSEEFPPEFNNVAGKEVLFKVEKGADYAFKFDDSFKVRKICLDVTIIDLFKQDLNVATPEARIFPVPFPSLDDDAEENNDSGAEKKPNGGDKCVELSPVSVDDVLADSVVCYALNESVTSDCTKGRGKGGRNSRLRR. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02839 516 CDD RPA1_DBD_A_like 19 107 - -
Seca7g02839 516 Gene3D - 268 431 IPR012340 -
Seca7g02839 516 PANTHER OS03G0429900 PROTEIN 7 401 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca7g02839 516 Gene3D - 5 112 IPR012340 -
Seca7g02839 516 SUPERFAMILY Nucleic acid-binding proteins 274 428 IPR012340 -
Seca7g02839 516 MobiDBLite consensus disorder prediction 446 471 - -
Seca7g02839 516 Pfam Replication factor-A C terminal domain 291 428 IPR013955 -
Seca7g02839 516 CDD RPA1_DBD_C 276 400 IPR047192 -
Seca7g02839 516 Gene3D - 114 248 IPR012340 -
Seca7g02839 516 Pfam Domain of unknown function DUF223 43 113 IPR003871 -
Seca7g02839 516 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Seca7g02839 516 SUPERFAMILY Nucleic acid-binding proteins 122 246 IPR012340 -
Seca7g02839 516 CDD RPA1_DBD_B_like 140 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02839 Seca-Chr7 80253988 80257102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02839 7 371 Core DNA Replication Machinery Family AT2G06510 23.333 6.23e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02839 - - lja:Lj6g3v0884310.1 417.542