Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02817 ATGAATGATGACAATTTGCCACCAATTCTTGGCATTAGGAACTATATTTCTGCGTGCAGTATGCCTTTTGAGAAGCAACTGACAAAAAGCGATTTGAGGGTAGATCAAAATAGATTTTTGCTGAACAAGAGTCATGTGGAAACATCTTTCTTGCCCTTGTTGAGAGAAGATGAAAACATCAAGGAAGGGATACCAGTCATTACCTATAATATGGATGGCAATATGTTCACCATGACATTCAAGATTTGGGCAGATGAGTATTATGTGCTTATGGGAGGGTGGAAAGCTTTCTTCCAAGCACATACATTGCAAATTCAAGATTATGTCAAAGTGTGGATGTTTCGTCATTCAAAAACCAACAACCTATGTTTTGTTCTTAGTATCAGAAAGGTTTAA 396 0.3712 MNDDNLPPILGIRNYISACSMPFEKQLTKSDLRVDQNRFLLNKSHVETSFLPLLREDENIKEGIPVITYNMDGNMFTMTFKIWADEYYVLMGGWKAFFQAHTLQIQDYVKVWMFRHSKTNNLCFVLSIRKV. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02817 131 Gene3D - 14 131 IPR015300 -
Seca7g02817 131 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 17 127 IPR005508 GO:0003677
Seca7g02817 131 Pfam B3 DNA binding domain 23 122 IPR003340 GO:0003677
Seca7g02817 131 SUPERFAMILY DNA-binding pseudobarrel domain 23 127 IPR015300 -
Seca7g02817 131 CDD B3_DNA 23 130 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02817 Seca-Chr7 79599833 79600228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02817 9 126 B3 DNA Binding Superfamily AT4G03170 41.667 1.47e-24 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca7g02817 B3 2.2e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02817 - - tpra:123915381 162.925