Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02816 ATGCAAAAGGACAAGGAAGCTGCTAGCAAAGAGGGGAAAGATATGGAAATGGAAACAAAGGAGGAAACCCTACCACCAGGGTTTCGATTTCATCCTACCGATGAAGAACTTATCTCTTACTATCTCATAAACAAGATTTCAGATTCTAGTTTTACTGGCAAAGCAATAGCTGATGTGGATCTCAACAAGTGTGAGCCATGGGAGCTGCCAGGAAAGGCAAAGATGGGGCAAAAGGAATGGTACTTCTTCAGTTTAAGAGATAGGAAATATCCTACGGGTGTGAGAACCAATCGAGCAACAAACACTGGGTATTGGAAAACCACAGGCAAAGACAAAGAGATATTCAACAGTGTTACTTCAGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGCAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATACCGCATTCATTCAAAATCAAGCTTCAGAACCAACAAGCAGGATGAATGGGTGGTTTGCCGTGTATTCCGCAAGAGTGCTGCTGGTGCAAAGAAGTACCCTTCTTCCAACCCAACCAGAGCAGCAGTGAATCCTTATAGCTTAGAAGTTGGTACAAGCATTGTTCCACCACCAATGATGCAGTTAGGAGATCCTTCTGCTGCTCATTTCCTTTACGGAAGGAACTACATGAGCAATGCAGAGCTAGCTGAAGTTACTAGGGTCCTGAGAGGATCAACCAGTAGTACTACTATCAACCTACCACCAATGCAGCCCCATTTCAACTACCCACCACCTGGAGGAGGAGGATTCACCATTTCAGGGCTTAACTTGAACCTTGGAGGAGCAGCAGAAGCCACAAGTAGTACACAACCAATTTTGCGCCCAATGATGGCACCGCCACAGCCACAGCCACACACTATGGATTTCAGTTCCACCAATAATGGATTTCAGTATAATGGTGCAGAAATGAGCAATAATGCAAATCCTCATGCCAATAGCAGGTACATGGGTGGTATGGACCATTGCGTGGATCTTGACAATTACTGGCCTTCCTACTAA 1044 0.4502 MQKDKEAASKEGKDMEMETKEETLPPGFRFHPTDEELISYYLINKISDSSFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSSFRTNKQDEWVVCRVFRKSAAGAKKYPSSNPTRAAVNPYSLEVGTSIVPPPMMQLGDPSAAHFLYGRNYMSNAELAEVTRVLRGSTSSTTINLPPMQPHFNYPPPGGGGFTISGLNLNLGGAAEATSSTQPILRPMMAPPQPQPHTMDFSSTNNGFQYNGAEMSNNANPHANSRYMGGMDHCVDLDNYWPSY. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02816 347 Gene3D NAC domain 33 177 IPR036093 GO:0003677|GO:0006355
Seca7g02816 347 SUPERFAMILY NAC domain 16 173 IPR036093 GO:0003677|GO:0006355
Seca7g02816 347 ProSiteProfiles NAC domain profile. 24 173 IPR003441 GO:0003677|GO:0006355
Seca7g02816 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 278 - -
Seca7g02816 347 FunFam NAC domain-containing protein 100-like 33 177 - -
Seca7g02816 347 Pfam No apical meristem (NAM) protein 25 151 IPR003441 GO:0003677|GO:0006355
Seca7g02816 347 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02816 Seca-Chr7 79514456 79518372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02816 10 347 NAC Transcription Factor Family AT2G24430 55.337 1.20e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca7g02816 NAM 1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02816 - - lja:Lj1g3v2035130.1 511.916