Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02786 ATGGAAACAACTAAAAACACCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAACACTTCCTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGTCCCAAGAAAGAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAATGTTGTTACAAAAAAAGAACCATAGGGTTGTTAAGGAAGGTAGAGGAGCTTTCCACACTATGTGGTATCCCTACATGCGCAATCATCTCTGGTCCAGGTGATACTGAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAATGGTGTTAAGTCCAGGGAAGTGGTTACCGAATTGTCTTTTATGCATGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTCAAGGAGAGGAACAATGAGAAAAATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAGTGATTTGAAGTGTTTACTTGGTTATGTGGAGCGAAAACTGAACGAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCCTAATCCTCCTCCTCCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATTATCCTTAGATTTGGTGAAAGAGGCTGATCAGTTGAATAGCTGTTATGACAATGATAATAATATAGGTAGTAGCAGCATGGGGCTACAACCACCATATGCAAATCTTAGTGATATTGATATGGTGTTGCCCCAAGAAAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTGGAGATCGCATTGATGAAAGTGACCTAGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTTGAAGGTCTCATTGGTGAAAGTGATCACCTGGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTTGAAGGTGTCAATGGTGAAAATGACTTGTGGTTGTTACCTCAACGCAATTTTGGAGGTCTCAATGGGGAAAGTGACTCAAGGGTGTTAACTCAAGACAATTTTGGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATTTTGAAGGTCTCAATGGTGAAATGGGTGATAGTTCAAAGGTGTGGCCTGGAGGTAATTTTGGAGAACTCATTGATGGAAGTGGTCTTTTAGAGATGTATAATTTTGATGGTCTCAATGGTGAAAGTGTTGATAGTTCACAGGTGTTTCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAAAGATGTTGTTTGAAGGTAATTTTGAAGGTCTCAATGGTGAAAGTAATTCAAGGCTTCTGAATGGAAGCTCTACTGATGAAATTGGAGGCAGTAACATATGGCCATCTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAGAGCAGCATAATGAAAATCAAGAAGGGTTCATTAACAACTCTGGAGCCAACACTCATGAAGTTTCCATGGGGAAATTCGATGCAAACTTTATTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAAATTTTGCTAGTTGCGGTGAATTTAGAAGTGGTACTGAAGTGCCTACATCATTTGGAGGAAATTTTCCTTGA 1686 0.4039 METTKNTLPPPPPPPPPPPPPPPQTLPPPPPQTKVNRVPRKRKVSLKLIENLKVRKCCYKKRTIGLLRKVEELSTLCGIPTCAIISGPGDTEPKIWPSPEVAKQLLQRLEEVPNGVKSREVVTELSFMHDKTKKLENQLARLKERNNEKNMSILMHQIHHDGKSLSDFEPSDLKCLLGYVERKLNEVRMRTKHFKQVLPPNPPPPPPVSCPQENEVLEKQLSLDLVKEADQLNSCYDNDNNIGSSSMGLQPPYANLSDIDMVLPQENFGGFNNVSDLGVFPPSNFGDRIDESDLGSEVWPPQGNFEGLIGESDHLGSEVWPPQGNFEGVNGENDLWLLPQRNFGGLNGESDSRVLTQDNFGGLNGESDLGMLLEDNFEGLNGEMGDSSKVWPGGNFGELIDGSGLLEMYNFDGLNGESVDSSQVFPEGNFGDLNDGSDLLKMLFEGNFEGLNGESNSRLLNGSSTDEIGGSNIWPSYGHFESTIDGSYMEIEQHNENQEGFINNSGANTHEVSMGKFDANFIGNNNGNNLNFGLPTHGNFASCGEFRSGTEVPTSFGGNFP. 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02786 561 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Seca7g02786 561 MobiDBLite consensus disorder prediction 1 42 - -
Seca7g02786 561 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 49 89 IPR002100 GO:0003677|GO:0046983
Seca7g02786 561 Gene3D - 53 160 IPR036879 GO:0003677|GO:0046983
Seca7g02786 561 ProSiteProfiles MADS-box domain profile. 39 85 IPR002100 GO:0003677|GO:0046983
Seca7g02786 561 SUPERFAMILY SRF-like 41 130 IPR036879 GO:0003677|GO:0046983
Seca7g02786 561 CDD MADS_SRF_like 41 113 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca7g02786 561 SUPERFAMILY Formin homology 2 domain (FH2 domain) 12 20 - -
Seca7g02786 561 MobiDBLite consensus disorder prediction 1 35 - -
Seca7g02786 561 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02786 Seca-Chr7 77219075 77220760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02786 42 182 MADS-box Gene Family AT5G26650 32.215 1.60e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca7g02786 SRF-TF 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02786 - - gmx:106798339 210.69