Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02744 ATGAGAGTTCCAGTTTCAGAAGCATCAGAGAGCAGCTCCAACTCATTTCCTTCGCCACCACCAAATGACAAAAAAGTAAAACGGAATCGAGAGTCGAACAAACACCCAGTGTACAGAGGTGTGAGGATGCGGAATTGGGGGAAATGGGTTTCTGAAATCCGTGAGCCAAGGAAGAAATCGAGAATATGGCTAGGGACATTCCCCACACCAGAAATGGCAGCAAGAGCACATGACGTGGCAGCTTTGAGCATCAAAGGAACCTCTGCCATTCTCAACTTCCCTCACCTCGCCACGTGTTTCCCTCGTCCTGCTTCTTTAGCCCCTCGTGATGTTCAAGCAGCTGCTGCAAAAGCTGCTCAAATGGATAACTTCGAATTGCCTTCTTCAACGATGGATTTGTCTGCTGCTTCTGAAGAACTGAGTGAGATCATAGAGCTACCAAGGTTGGAAAGTGGTTGTGAGGTGGGGAAGGAGTTTGTGCTCATGGACTCGCATGATGCGTCATGGATGTATCAACCACCAATGCCGTGGTTGTTGCAGGATGATGCTGGGTGTAGTGGTGATGAATTTGCAGTTCCGGGGAGTGTTGGGGTTGTCACTAGTTTCGAGAGTTTCATGTGGTCGAATAATTATTAA 636 0.4796 MRVPVSEASESSSNSFPSPPPNDKKVKRNRESNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTSAILNFPHLATCFPRPASLAPRDVQAAAAKAAQMDNFELPSSTMDLSAASEELSEIIELPRLESGCEVGKEFVLMDSHDASWMYQPPMPWLLQDDAGCSGDEFAVPGSVGVVTSFESFMWSNNY. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02744 211 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Seca7g02744 211 Gene3D AP2/ERF domain 37 95 IPR036955 GO:0003700|GO:0006355
Seca7g02744 211 MobiDBLite consensus disorder prediction 1 37 - -
Seca7g02744 211 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Seca7g02744 211 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g02744 211 MobiDBLite consensus disorder prediction 23 37 - -
Seca7g02744 211 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Seca7g02744 211 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Seca7g02744 211 Pfam AP2 domain 36 86 IPR001471 GO:0003700|GO:0006355
Seca7g02744 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 151 - -
Seca7g02744 211 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Seca7g02744 211 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Seca7g02744 211 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02744 Seca-Chr7 75163031 75163666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02744 1 184 AP2-EREBP Transcription Factor Family AT5G11590 56.459 6.08e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca7g02744 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02744 K09286 - gmx:100305349 238.424