Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02730 ATGGCTTCTTCTTCCTTAAAGGTGCTCAGTCGAAGAAGGACCCATGCTCCCAAATCTTCATGCCCTAACGACGTCGTCTGCGAGGAATGCGGCTCCGGTCACTCCCCGTCCAAGTTGCTTCTGTGCGACAAATGCGACCGAGGTTACCATCTATTCTGCCTCAGACCCATCCTTCCTTCTGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCCACAACACCAACCCCAAACCCAAATCTTTTCCTCTTGTGCAGACCAAAATCATTGACTTCTTTCGAATTCAACGTTCCTCGGTTGCATCCCTGGTTTCGAATCAAGACACCCGGAAGAAGCGAAAGCGGTGTAGTAGCTTAGTGGTGTCCAAAAAGAAGAGGAAACTGTTGCCCTTCATCCCAAGTGAGGATCCTAAAAGGAGATTAGAACAGATGGCATCGCTCGCGACGGCGCTGACTGCGACCAAAACAGAATTCAGCAATGAGCTTACCTACATGCCTGGAATGGCCCCAAGGTCTGCTAATCGTCCTGCTCTGGAGCATGGTGGAATGCAGGTGATTAACTTTGTGCATTGTCTCATTCTGCATTTTCATTATTTGGACAGGAATAATATATCTCATAAGCTTTAA 627 0.4864 MASSSLKVLSRRRTHAPKSSCPNDVVCEECGSGHSPSKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCPSCSHNTNPKPKSFPLVQTKIIDFFRIQRSSVASLVSNQDTRKKRKRCSSLVVSKKKRKLLPFIPSEDPKRRLEQMASLATALTATKTEFSNELTYMPGMAPRSANRPALEHGGMQVINFVHCLILHFHYLDRNNISHKL. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02730 208 PANTHER OS02G0192300 PROTEIN 13 124 - -
Seca7g02730 208 SUPERFAMILY FYVE/PHD zinc finger 17 79 IPR011011 -
Seca7g02730 208 CDD PHD_RSF1 27 71 - -
Seca7g02730 208 MobiDBLite consensus disorder prediction 1 20 - -
Seca7g02730 208 SMART PHD_3 26 72 IPR001965 -
Seca7g02730 208 Pfam PHD-finger 27 73 IPR019787 -
Seca7g02730 208 Gene3D SET domain 113 204 IPR046341 -
Seca7g02730 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Seca7g02730 208 ProSitePatterns Zinc finger PHD-type signature. 27 71 IPR019786 -
Seca7g02730 208 ProSiteProfiles Zinc finger PHD-type profile. 24 74 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02730 Seca-Chr7 72631884 72632753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02730 23 71 C2H2 Transcription Factor Family AT3G01460 46.939 7.74e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g02730 PHD 2.2e-11 CL0390