Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02728 ATGGTTAATTTTGATGCAGGTGAATATTCAGAAAGGGAAGGGTACAATGGATCTGAATATGCTCCTACTTATGAGGACAAGGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTCATGTCTTCCTGCAAGAGGCTGAGAATAGTGAAAGGATCAGAAGCAAAAGGGTTGGCTTGTTTGTGA 192 0.4219 MVNFDAGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIVKGSEAKGLACL. 64
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02728 63 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 58 IPR003311 GO:0005634|GO:0006355
Seca7g02728 63 SUPERFAMILY CAD & PB1 domains 16 51 - -
Seca7g02728 63 Pfam AUX/IAA family 15 61 IPR033389 -
Seca7g02728 63 ProSiteProfiles PB1 domain profile. 1 59 IPR000270 GO:0005515
Seca7g02728 63 Gene3D - 1 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02728 Seca-Chr7 72628333 72628621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02728 7 60 B3 DNA Binding Superfamily AT2G46530 38.889 2.23e-06 40.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca7g02728 AUX_IAA 7.5e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02728 K14484 - vvi:100262403 121.709