Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02709 ATGGATTTGCAAAGATTGGGGCCCTCCGATCCAGGTGGTTCTTCCCGTCGCTCAACCGCTCCTCTAACAAAATCAACCACTTCCTCTCCATCAGGAAGCAAAAAGAGGCTCATCAAGCTCTCTATCCTCGCCGGCGTCTTAATCGTCGCCTCCGCCATCTCAGCGGTTCTCGTCACCGTCATCCGCTCCCACGGCAATCAAAACCCACCGAACCTCCACGGCAAACCCACTCAGGCAATCTCCCGAACCTGCAGCAAGACCAGATTCCCCACTCTTTGCATCAACTCCCTCCTCGACTTCCCAGGCTCCACCACAGCCTCGGAGCAAGACCTCGTCCACATCTCCTTCAACATGACACTCCGCCACGTCAGCAGAGCATTGTTTGCATCCACCGGCCTTTCCTTCGCCGCCCCCGACCCGCGAGTCCGTGCCGCCTACGACGACTGCCTGGAGCTCCTCGACGAGTCCATGGACGCGCTGGAAAGGTCCCTCGCATCCATCTCGGCTTCATCTCAGGACGTGGGGTCCACCGAGGATGTGATGACGTGGCTGAGCGCCGCGCTCACCAACCAGGACACGTGTGCGGAAGGCTTTGAGGACACCAGCGGGAGCCTCAAGGACCAGATGGCTAATAATTTGAAGGACTTGTCTGAACTCGTCAGCAATTGTCTCGCGATATTCTCAGCGAGTGGAAATGGTGATTTCTCCGGTGTACCCATACAGAACAAAAGAAGAAGATTGATGGGAACGGAAGAGGAAGGAAATTTTATTAATACGGCCGAGAAATTTCCAAAATGGCTGAATAAACGAGATAGGAGATTGTTGAGTTTACCAGTATCGGCGATACAAGCCGATATCGTCGTGTCCAAGAGTGGTAACGGAACTGTGAAGACAATCGCCGAGGCCATTAAGAAAGCACCAGAGCATAGTAACCGCCGCTTCATAATCTACGTGAGGGCAGGAAGGTATGAAGAGAATAACTTAAAGGTGGGGAAAAAGAAAACTAACCTTATGTTCATAGGAGACGGGAAGGGTAAAACTGTCATCACAGGGAAGAAAAATGTTGTAGATGGAATGACCACTTTCCATACCGCATCTTTCGCTGCTAGTGGTGCTGGTTTCATTGCACGAGACATCACGTTCGAGAACTACGCCGGTGCGGCAAAGCACCAAGCGGTGGCGCTCCGTGTGAGTGCAGACCACGCGGTGGTGTTCCGGTGCAACATTTTGGGGTACCAAGACTCATGCTATGTGCATTCCAACCGTCAATTCTTCCGTGAATGTAACATTTACGGCACCGTGGACTTCATATTCGGCAACGCTGCTGTGGTTTTCCAAAAATGCAACCTTTACGCTCGTAAGCCCATGGCCCAACAGAAAAACACCATCACGGCTCAAAATAGGAAAGACCCGAATCAGAATACGGGTATATCCATCCACGACTGTCGGATCTTACCCGCCCCAGATCTCGCCCCGGTTAAGGACAGCATCCAATCTTTTCTGGGCCGTCCATGGAAAATGTACTCTAGAACCGTGTACATGTTGTCCTACATAGGTGATCACGTGCATCCTAATGGATGGTTGGAGTGGGATGGGGACTTTGCTTTAGACACGTTGTATTATGGTGAGTACATGAATTATGGGCCGGGTGCAGGAATCGAGCAACGGGTCAAATGGCGTGGGTACCGGGTCATTACTTCTACCGTTGAGGCTAACAGGTTCACAGTGGCCCAATTTATATCCGGGTCCTCCTGGTTACCGTCAACTGGGGTGGCGTTTTTGGCCGGGTTATCCACCTGA 1800 0.52 MDLQRLGPSDPGGSSRRSTAPLTKSTTSSPSGSKKRLIKLSILAGVLIVASAISAVLVTVIRSHGNQNPPNLHGKPTQAISRTCSKTRFPTLCINSLLDFPGSTTASEQDLVHISFNMTLRHVSRALFASTGLSFAAPDPRVRAAYDDCLELLDESMDALERSLASISASSQDVGSTEDVMTWLSAALTNQDTCAEGFEDTSGSLKDQMANNLKDLSELVSNCLAIFSASGNGDFSGVPIQNKRRRLMGTEEEGNFINTAEKFPKWLNKRDRRLLSLPVSAIQADIVVSKSGNGTVKTIAEAIKKAPEHSNRRFIIYVRAGRYEENNLKVGKKKTNLMFIGDGKGKTVITGKKNVVDGMTTFHTASFAASGAGFIARDITFENYAGAAKHQAVALRVSADHAVVFRCNILGYQDSCYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNLYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLAPVKDSIQSFLGRPWKMYSRTVYMLSYIGDHVHPNGWLEWDGDFALDTLYYGEYMNYGPGAGIEQRVKWRGYRVITSTVEANRFTVAQFISGSSWLPSTGVAFLAGLST. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02709 599 SMART PMEI_2 75 226 IPR006501 GO:0004857
Seca7g02709 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 228 IPR035513 -
Seca7g02709 599 MobiDBLite consensus disorder prediction 11 33 - -
Seca7g02709 599 PANTHER PECTINESTERASE 53 587 - -
Seca7g02709 599 NCBIfam pectinesterase inhibitor domain 62 227 IPR006501 GO:0004857
Seca7g02709 599 Pfam Plant invertase/pectin methylesterase inhibitor 79 226 IPR006501 GO:0004857
Seca7g02709 599 SUPERFAMILY Pectin lyase-like 280 596 IPR011050 -
Seca7g02709 599 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Seca7g02709 599 MobiDBLite consensus disorder prediction 1 33 - -
Seca7g02709 599 FunFam Pectinesterase 76 230 - -
Seca7g02709 599 Gene3D - 279 597 IPR012334 -
Seca7g02709 599 FunFam Pectinesterase 279 597 - -
Seca7g02709 599 Pfam Pectinesterase 285 582 IPR000070 GO:0030599|GO:0042545
Seca7g02709 599 CDD PMEI-like_3 84 229 - -
Seca7g02709 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 77 229 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02709 Seca-Chr7 70729113 70733598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02709 1 598 Carbohydrate Esterase AT5G53370 64.286 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02709 - - gmx:106796002 962.985