Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02679 ATGTGTCCGAGGGGGAAATCCTTTTCCTGCTCTGAAGGATTACTGTTATGCTTCCTCCAAATTGCAGTTGTACTACTTCAACCAATTACTTGTGCCGTAAATAATCCGCGACTATGTTCCCCTTCTTCGTGCGGAAAAATCACCAACATAAGCTATCCATTTCGACTGAAGGATGACCCAGAAACCTGTGGGGATAAGAGGTATGAGTTAGGTTGCGAAAACAACCGCACAGTGTTATCTCTGTTTTCGGGTAAATACTATGTGCAGGCAATCAACTACAATAACTACGCTATCCGCCTTGTTGATCCCGCCATTCAAGAAGCTGATTGCTCCTCCATTCCTCGCTATTCCTTGTCCGCACCCAATTTCACCAGTTCTTACAATAGTAGGTACAACGAGGATCCATATAAAGCCCCTTCTGACTTCCTGTACGTAGTTTACTTGAACTGTAGCAATCCAGTGGTGGATGATCCTCGGTACGTGGATACAGATCCCTGTCTCAACTCGCATTCCAACGGCCACGTTTATGCTTTCGTTGGGGACCTAGCTCCTACGAAATTAGAAGTTGGTTGCAGCGTGAAGTTGGTTGCTCCGACATCACTTTTTAGTCACCGGTGGGTATATGTGGAACTGAAAACCTTTTCCTACGCGGAAATTCATAGGATGCTAGTCTATGGATTTGATCTTTCGTGGTTAAGTGCTGCTACTTGTGAATATTTTTGTGGTGGCCAGGGCCAGCAATATTGCTATTTTGATGAAAAAACGGAGAATCTTAAATGCTTTTCTTCCCTGGATGTTTTCTGTACTTCTCCGTTGGGATTTGGCGTCAGATGCGGACTAGTACTAATAATAGGTTGGAACATATCAGCAGATGTCGAATACAGTGACTTTTCTGATTCTGAACTTGCCATTGAGATAGGAAGAGTCATAGGAAGGTATGTCGTGCCGTCATATTATACTGCGAGATTTACATTGGGCCTCATAGTTTTTTGTGTACTATTAATATATATATGTCGAAAAAGACATGCATCAATGTATGGAGATATTGAAGACTTTCTACAAGGGAACACCCTCATGCCAATAAGGTATTCATTCAAAGAGATAAAGAAGATGACTGAAAATTTTAAGTACAAATTGGGTGAAGGAGGCTATGGCTCTGTTTATAAAGGAAAGCTACGCAGTGGACCTTTTGTAGCCATAAAGATGTTAGGTAAAGCTAAGGCTAATGGACAAGAATTCATCAGTGAAGTTGCAACAATAGGAAGAATACACCATGCTAATGTAGTGCGACTTATTGGATTTTGTGCTGAGGGGTCAAAACGTGCTCTGGTTTATGAATTCATGCCCAATGGTTCTTTGGATAGATATATTCTGTCCAAAAATGATAGTACACCTTTAACTTATGAGCAAATGTATGAGATATCCCTTGGAGTGGCTCGTGGTATTGCTTATCTGCATCAAGGTTGTGACATGCAAATTTTGCATTTTGACATCAAGCCCCATAACATCCTTCTTGATGACAACTTCAATGCTAAGGTTTCAGACTTCGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACATTGACAGCAGCAAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACCAAAATATTGGGGGAATTTCCTATAAGGCTGATGTCTATAGCTTTGGTATGCTTTTGATGGAAATGGCAAGCAGGAGAAGAAACTTGAATCCTCATGCAGATAATTCAAGCCAGGTTTTCTTTCCCTTTTGGATTTACAATCAATTGAATGAAGAAAAGGAGATAGAAATGGAAGAAGTTACATATGAAGGAAAGAATAGTAGTGTGAAGAAAATGTTCTTAGTTGCGCTATGGTGTATACAATTGAAACCCACTGATCGTCCTTCAATGAACAAAGTAATTGAGATGCTCGAAGGAGATGTTAAAAGCATTGAAATGCCTCCAAAGCCTTCTCTGTATCCAACAGAAATGATTCAAAGAGAACTTGAAACAAACTCTGAACCAAGTGTGTCAGATGATGCTGCATATGCTCTTAATTAG 2061 0.4042 MCPRGKSFSCSEGLLLCFLQIAVVLLQPITCAVNNPRLCSPSSCGKITNISYPFRLKDDPETCGDKRYELGCENNRTVLSLFSGKYYVQAINYNNYAIRLVDPAIQEADCSSIPRYSLSAPNFTSSYNSRYNEDPYKAPSDFLYVVYLNCSNPVVDDPRYVDTDPCLNSHSNGHVYAFVGDLAPTKLEVGCSVKLVAPTSLFSHRWVYVELKTFSYAEIHRMLVYGFDLSWLSAATCEYFCGGQGQQYCYFDEKTENLKCFSSLDVFCTSPLGFGVRCGLVLIIGWNISADVEYSDFSDSELAIEIGRVIGRYVVPSYYTARFTLGLIVFCVLLIYICRKRHASMYGDIEDFLQGNTLMPIRYSFKEIKKMTENFKYKLGEGGYGSVYKGKLRSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCAEGSKRALVYEFMPNGSLDRYILSKNDSTPLTYEQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFNAKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLMEMASRRRNLNPHADNSSQVFFPFWIYNQLNEEKEIEMEEVTYEGKNSSVKKMFLVALWCIQLKPTDRPSMNKVIEMLEGDVKSIEMPPKPSLYPTEMIQRELETNSEPSVSDDAAYALN. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02679 686 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Seca7g02679 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Seca7g02679 686 PANTHER RUST RESISTANCE KINASE LR10-RELATED 348 664 IPR045874 GO:0004672
Seca7g02679 686 Pfam Wall-associated receptor kinase galacturonan-binding 39 102 IPR025287 GO:0030247
Seca7g02679 686 Pfam Protein kinase domain 376 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02679 686 ProSiteProfiles Protein kinase domain profile. 373 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02679 686 Gene3D Transferase(Phosphotransferase) domain 1 448 653 - -
Seca7g02679 686 FunFam serine/threonine-protein kinase PBS1-like 344 447 - -
Seca7g02679 686 SMART serkin_6 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02679 686 CDD STKc_IRAK 379 646 - -
Seca7g02679 686 Gene3D Phosphorylase Kinase; domain 1 351 447 - -
Seca7g02679 686 SUPERFAMILY Protein kinase-like (PK-like) 358 645 IPR011009 -
Seca7g02679 686 FunFam PR5-like receptor kinase 448 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02679 Seca-Chr7 68329582 68339971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02679 37 660 Receptor kinase-like Gene Family AT5G38260 35.368 1.64e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca7g02679 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02679 - - tpra:123893228 836.254