Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02678 ATGATGAGGTGGGTACCGTTTCTAATTTTTCACATCTTCAGGATGGAAAGGGAAGCCACATGCTTCTGTTCCTCCCACGCGCACACACTAGTGTCAATATTTGCTACAATCCTTCTCCTATTGCAACAAAATTGCCTCGCTAAGCATCATCCACCATGCCCTCCTTCTTCATGCGGCAAAATCCACAATATATCTTATCCATTCCAACTCAAAGGCGATCCAAGCTACTGTGGAGACCCAAGGTACCAATTAGATTGCGAGAACAACGGGACATTATTGTTGAATCTGTTCTCAGGGAAATACTATGTTCAAGACATCGATTACAAGAGGTACAAAATCCTATTGAGTGATGCAGGTGCAGTGGAGGATGCTAATTGCTCTTTCATCCCTCGCTATTTTCTCTACGATCGCAGTTTCAAGGAGCTTGTTGGTCCAGATGATTTTGGATTAGAGCCATTTATTTTGGACCCTATCGATCCTCCGCGAATAGCATATTTCAACTGTGTCAATCCAATCACCAATGATCCTCGATACGCTAAGGTGGATACCAGTCGATGTGGGACCCGAGGACATGTTTATGCAGTTGCGGAACCATCTTTGTTTGAGTATCACAAGGGGGACATTAAGGTTGGGTGCGAACTTATGGTGGCTACCTTGGGTAGTAGTAGGAGCTTGCCCGAGATTCAAAAGGGGAACGCGTCTTATGATGAAATCCATAGGATGATAATTGAAGGAGTTGAGGTGTCGTGGTTACCTGTGATCTGTGAAGATCGGTGTGGAAAGAGGACCAAATGCGAGGTTATCAATGAATCTAATGGAGAAGTCCAATGTGATAGGCACTACTGTCATTACGCCTACCAAACAACCGATAAATGCGGACTTCCGCAACAAATTATTGGTTATACTCGAGCTTATCTCAGAGGCATTATTTTTGGACTTCTCAGCAGAATAACATTTAGCACAAAGCAATTGGATAACCCAGTTGGACTACAATATTTTGATGGAGGAATTTTCATAGGACGAACTGTTATACCAGTAATTGTGGCAGTCAGATATGTGTTTGGAGTTGCACTTTTCCTTACGTTATTCATCTATAAGTGGCGACGAAGACATTTGTCAGTGTATGAAAACATTGAAAACTTTCTGGTAGAGAGCAATCTCAATCCCATTAGGTACGAGTACAAAGAAATCAAGAAAATGACCGGAGGTTTCAAAGTTAAATTGGGTCAAGGAGGCTTCGGATCTGTATACAAAGGAAAGCTCAGAAGTGGATTGGATGTAGCAGTGAAGATATTGACCAAATCCAATGCTAATGGACAAGACTTTATTAGTGAGGTAGCTACCATTGGTAGAATACATCATGTGAATGTGGTACGTCTTATTGGATATTGTGTTCATGGAAAAAAACGTGCTCTGGTTTACCAATTCATGCCTAATGGGTCATTGGATAAATACATTTTCTCTAAAGATGGAAGTGCCCCTTTAAGTTATGAGAAAATATATGAAATAGCTCTTGGAATAGCTCGTGGGATAGCATATCTGCATCAAGGCTGTGATATGCAAATTCTACATTTTGACATCAAGCCTCATAATATTCTTCTAGATGACAATTTCATTCCAAAGGTTTCAGATTTTGGACTTGCAAAGCTATATCCTGTGAATGATAGCATTGTCACTTTAACTGCAGCAAGGGGAACTTTGGGTTACATGGCTCCAGAATTGTTCTATAAAAATATTGGAGGGATATCTTATAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATGGCAGGTAGGAGGAGAAACTCAAATCCTCATGCAGAGCACTCAAGCCAAGTTTACTTCCCCTTTTGGATCCATGATCAATTTAAAGAAGAAAAAGATGTTGAAATGTTGGAAGATACCTCAGAAGAGGAAAAGATTCTAGTAAAAAGGATGTTCATAGTTGCACTTTGGTGTATTCAATTGAAACCGAGTGATCGTCCTTCAATGAACAAGGTAGTGGAGATTCTTGAAGGCAAAGATGAAAGCCTTGAAATGCCTCCAAGGCCTTCTTTTTATCCAAATGAAACAATAGGACATAATGATGGAATCAACTCTGACCAAACATCTTGGAGTGATTCAACTAGTTCTGATATGTATCTTACTGAACTCTAA 2163 0.4027 MMRWVPFLIFHIFRMEREATCFCSSHAHTLVSIFATILLLLQQNCLAKHHPPCPPSSCGKIHNISYPFQLKGDPSYCGDPRYQLDCENNGTLLLNLFSGKYYVQDIDYKRYKILLSDAGAVEDANCSFIPRYFLYDRSFKELVGPDDFGLEPFILDPIDPPRIAYFNCVNPITNDPRYAKVDTSRCGTRGHVYAVAEPSLFEYHKGDIKVGCELMVATLGSSRSLPEIQKGNASYDEIHRMIIEGVEVSWLPVICEDRCGKRTKCEVINESNGEVQCDRHYCHYAYQTTDKCGLPQQIIGYTRAYLRGIIFGLLSRITFSTKQLDNPVGLQYFDGGIFIGRTVIPVIVAVRYVFGVALFLTLFIYKWRRRHLSVYENIENFLVESNLNPIRYEYKEIKKMTGGFKVKLGQGGFGSVYKGKLRSGLDVAVKILTKSNANGQDFISEVATIGRIHHVNVVRLIGYCVHGKKRALVYQFMPNGSLDKYIFSKDGSAPLSYEKIYEIALGIARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVNDSIVTLTAARGTLGYMAPELFYKNIGGISYKADVYSFGMLLMEMAGRRRNSNPHAEHSSQVYFPFWIHDQFKEEKDVEMLEDTSEEEKILVKRMFIVALWCIQLKPSDRPSMNKVVEILEGKDESLEMPPRPSFYPNETIGHNDGINSDQTSWSDSTSSDMYLTEL. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02678 720 FunFam serine/threonine-protein kinase PBS1-like 373 476 - -
Seca7g02678 720 MobiDBLite consensus disorder prediction 694 720 - -
Seca7g02678 720 PANTHER RUST RESISTANCE KINASE LR10-RELATED 375 693 IPR045874 GO:0004672
Seca7g02678 720 SMART serkin_6 402 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02678 720 MobiDBLite consensus disorder prediction 681 720 - -
Seca7g02678 720 Pfam Protein kinase domain 406 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02678 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Seca7g02678 720 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Seca7g02678 720 FunFam PR5-like receptor kinase 477 685 - -
Seca7g02678 720 ProSiteProfiles Protein kinase domain profile. 402 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02678 720 Gene3D Transferase(Phosphotransferase) domain 1 477 683 - -
Seca7g02678 720 CDD STKc_IRAK 408 675 - -
Seca7g02678 720 SUPERFAMILY Protein kinase-like (PK-like) 386 674 IPR011009 -
Seca7g02678 720 Pfam Wall-associated receptor kinase galacturonan-binding 53 117 IPR025287 GO:0030247
Seca7g02678 720 Gene3D Phosphorylase Kinase; domain 1 378 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02678 Seca-Chr7 68263891 68267549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02678 53 689 Receptor kinase-like Gene Family AT5G38260 35.069 1.84e-104 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca7g02678 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02678 - - lja:Lj0g3v0275229.4 1077.39