Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02675 ATGTCATGCACAGGACTAGTACAGATAATAGGTAGGAACCTATCAACATCCATTAATAAGTTATCTGATTCTGATTCTGAACTTGGCATTGAGATAGGAAGAGTCATAGGAAGGTATGTCGTGCCGTCATATACAGCGAGATTTACATTGGGCCTCATAGTTTTTTGTGTACTGTTGATATATATATGTCGAAAAAGACACACATCAATGTATGGAGATATTGAAGACTTTCTACAAGGGAACACCCTCATGCCAATAAGGTATTCATTCAAAGAGATAAAGAAGATGACTGAAAATTTTAAGTACAAATTGGGTGAAGGAGGCTATGGCTCTGTTTATAAAGGAAAGCTACGCAGTGGACCTTTTGTAGCCATAAAGATGTTAGGTAAAGCTAAGGCTAATGGACAAGAATTCATCAGTGAAGTTGCAACAATAGGAAGAATACACCATGCTAATGTAGTGCGACTTATTGGATTTTGTGCTGAGGGGTCAAAACGTGCTCTGGTTTATGAATTCATGCCCAATGGTTCTTTGGATAGATATATTCTGTCCAAAAATGATAGTACACCTTTAACTTATGAGCAAATGTATGAGATATCCCTTGGAGTGGCTCGTGGTATTGCTTATCTGCATCAAGGTTGTGACATGCAAATTTTGCATTTTGACATCAAGCCCCATAACATCCTCCTTGATGACAACTTCAATCCTAAGGTTTCAGATTTCGGTCTTGCAAAGCTTTATCCTATTGACAAGAGCATTGTCACATTGACAAATATTGGGGGAACATGTGGTTACATGGCTCCAGAATTGTTCTACCAAAATATTGGAGGAATTTCCTATAAGGCTGATGTCTATAGCTTTGGTATGCTTTTGATGGAAATGGCAAGCAGGAGAAGAAACTTGAATCCTAATGCAGATAATTCAAGCCAACTTTTCTTTCCCTCTTTGATTTACGATCAATTGAATGAACAAAAGGAGATGGAAATGGAAGAAGTTACATATGAAGGAAAGAATAGTAGTGTGAAGAAAATGTTCTTAGTTGCGCTATGGTGTATACAATTGAAACCCACTGATCGTCCTTCAATGAACAAAGTAATTGAGATGCTCGAAGGAGATGTTAAAAGCATTGAAATGCCTCCAAAGCCTTCTCTCTATCCAACAGAAACGATTCAAAGAGACCTTGAAACAAACTCTGAACCAAGTGTGTCAGATGCTACTGCATATGCTCCTAGTTAG 1236 0.3794 MSCTGLVQIIGRNLSTSINKLSDSDSELGIEIGRVIGRYVVPSYTARFTLGLIVFCVLLIYICRKRHTSMYGDIEDFLQGNTLMPIRYSFKEIKKMTENFKYKLGEGGYGSVYKGKLRSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCAEGSKRALVYEFMPNGSLDRYILSKNDSTPLTYEQMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFNPKVSDFGLAKLYPIDKSIVTLTNIGGTCGYMAPELFYQNIGGISYKADVYSFGMLLMEMASRRRNLNPNADNSSQLFFPSLIYDQLNEQKEMEMEEVTYEGKNSSVKKMFLVALWCIQLKPTDRPSMNKVIEMLEGDVKSIEMPPKPSLYPTETIQRDLETNSEPSVSDATAYAPS. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02675 411 SMART serkin_6 98 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02675 411 Gene3D Transferase(Phosphotransferase) domain 1 173 384 - -
Seca7g02675 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Seca7g02675 411 MobiDBLite consensus disorder prediction 389 405 - -
Seca7g02675 411 ProSitePatterns Protein kinases ATP-binding region signature. 104 126 IPR017441 GO:0005524
Seca7g02675 411 MobiDBLite consensus disorder prediction 377 411 - -
Seca7g02675 411 PANTHER RUST RESISTANCE KINASE LR10-RELATED 70 389 IPR045874 GO:0004672
Seca7g02675 411 Gene3D Phosphorylase Kinase; domain 1 76 172 - -
Seca7g02675 411 FunFam PR5-like receptor kinase 173 381 - -
Seca7g02675 411 ProSiteProfiles Protein kinase domain profile. 98 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02675 411 FunFam serine/threonine-protein kinase PBS1-like 68 172 - -
Seca7g02675 411 SUPERFAMILY Protein kinase-like (PK-like) 83 370 IPR011009 -
Seca7g02675 411 Pfam Protein kinase domain 101 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02675 411 CDD STKc_IRAK 104 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02675 Seca-Chr7 68164515 68165750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02675 38 384 Receptor kinase-like Gene Family AT4G18250 45.352 1.62e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca7g02675 Pkinase 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02675 - - tpra:123893228 580.482