Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02651 ATGAATACTACTCAGCAAGAAAAGTTTGTTAGGTTTCAGGATGGTAACTCAGAGAAGGTTTCTGAGAGGAATTATCCTGCAATTAACATAACACACTCGGGGAGATTTAGAACTAAGTTGAGTTCATTTTCTGAGAAGTTCCAAAGGGGATTGGAATCTGGTTCTGAGAAGTTAAAGAGATTCAGGACATCATTTGAATCTTTTCCCTATAAGTATAATGGTGCTTTTTCTAGAAGCTTTGGTTCTAAAAGGAAAATTCTTGATCCACAGGGTCCATTCCTTCAAAAGTGGAACAAGATATTTGTGTTATTATGTGTTATTGCAGTATCATTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGATGTGAAGAAATGTCTTTCATTGGACAGCAAGATGGAGATTACAGCAACTGTTTTAAGAACTTTCTCTGATGTTTTATATATAATCCACATGTTTTTCCAGTTCCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTTGTTGAAGATTCTTGGGCAATAGCTTGGAGGTATTTGTCATCATATTTCTTAGTTGACATTCTTGCGATTCTTCCACTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGATGAGAGGCTTCAAATCACTCAATACAAAGAATTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCTCGTTTAGTACGGATAATTCCTTTATATAAAGAAGTTACGAGGACCTCTGGAATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTTGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCGAAGCAATATAATGTGTAACAAGGCTGATATGTATTGTAACAACCAATGGGGAGGGTTGAGCAAAATTTCAACATTCCTGAATGCTTCTTGCCCAATAAACGACGAAGATAAAAAGCTCTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCTAGAGACTTTCCTCAAAAATTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCGATGTTTGGGAAATCTGTTTTGCAGTTTTCATTTCCATATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGTTTCTTAAACAGACGTATTTGCAGTCAACAACAACAAGGTTGGAGGAGATGAGAGTAAAAAGGAGGGATGCTGAACAGTGGATGTCTCATCGATTGCTTCCTGATAGCCTGAGAGAAAGAATCAGACGATATGAACAATACAAATGGCAAGAAACTAGAGGTGTAGATGAAGACAATTTGATTCATAATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTTGAGAAAATGGATGAGCAACTTTTGGATGCTATGTGTGACCGACTCAAGCCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGTGAAGGAGACCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACTATGACAACTAATGGTGGAAGAACTGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGATTTCTGTGGAGAGGAGCTTCTGACATGGGCTTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAGACCCTTTCTGAAGTTGAAGCCTTCGCACTAAAAGCTGATGATCTGAAATTCGTGGCATCTCAGTTCCGGCGCCTCCACAGCAAGCAGTTGCGCCACACTTTCAGGTTCTACTCGCAGCAATGGCGGACATGGGCTGCGTGTTTCATACAAGCAGCCTGGCGGCGCTACAGTAGGAAGAAGCTTGAAGAGTCACTTGTTGAAGAGGAGAATAGGCTGCAAGATGCATTGGCAAAGGCTGGTGGTAGCTCACCAAGTCTAGGTGCCACAATATATGCTTCAAGGTTTGCTGCCAATGCACTCAGATTATTGCGTCGTAGCGGCACCAGGAAGACAAGGGTGCCGGAGAGAATACCCCCCATGCTGCTTCAGAAGCCTGCAGAACCTGACTTTACTGATGAAGAGCAATAG 2172 0.4134 MNTTQQEKFVRFQDGNSEKVSERNYPAINITHSGRFRTKLSSFSEKFQRGLESGSEKLKRFRTSFESFPYKYNGAFSRSFGSKRKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDVKKCLSLDSKMEITATVLRTFSDVLYIIHMFFQFRTGFIAPSSRVFGRGVLVEDSWAIAWRYLSSYFLVDILAILPLPQVVILIIIPKMRGFKSLNTKNLLKFVVFFQYVPRLVRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQEACRSNIMCNKADMYCNNQWGGLSKISTFLNASCPINDEDKKLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTDVWEICFAVFISISGLVLFSFLIGNMQFLKQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRYEQYKWQETRGVDEDNLIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSRKKLEESLVEEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRSGTRKTRVPERIPPMLLQKPAEPDFTDEEQ. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02651 723 Gene3D Jelly Rolls 492 612 IPR014710 -
Seca7g02651 723 SMART cnmp_10 494 625 IPR000595 -
Seca7g02651 723 Gene3D - 98 411 - -
Seca7g02651 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 718 - -
Seca7g02651 723 FunFam Cyclic nucleotide-gated ion channel 1 492 610 - -
Seca7g02651 723 Coils Coil 646 666 - -
Seca7g02651 723 MobiDBLite consensus disorder prediction 696 723 - -
Seca7g02651 723 CDD CAP_ED 494 625 IPR000595 -
Seca7g02651 723 SUPERFAMILY cAMP-binding domain-like 423 616 IPR018490 -
Seca7g02651 723 ProSiteProfiles cAMP/cGMP binding motif profile. 494 578 IPR000595 -
Seca7g02651 723 SUPERFAMILY Voltage-gated potassium channels 88 410 - -
Seca7g02651 723 Gene3D Helix hairpin bin 420 485 - -
Seca7g02651 723 FunFam Cyclic nucleotide-gated ion channel 1 421 485 - -
Seca7g02651 723 Pfam Ion transport protein 97 408 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca7g02651 723 Pfam Cyclic nucleotide-binding domain 514 605 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02651 Seca-Chr7 67611160 67618747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02651 5 722 Ion Channels AT5G53130 78.532 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02651 K05391 - gmx:100801032 1279.23