Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02608 ATGTCCTTTTCTCAACACTTTCTCATCCCCACTGAATCATTTTTCACGGAGAAGAAAAATAACCAAACCCTGAAGGCTCCAATGGATGATACCCTATCTGATATCTTCCAAGACACAAACTTTGGTGGAGACGATCTCTTTGCCATTTTGGAGAGCCTTGAAGACTTCCAAGATTTTCCACCTCCTATCAACAATGAAGCTTTTGTGAACACAACATCAAGAGAGAATGAGCAAAACACTACTAGAATGGTTTCAACAACATCTTCAAGTGCTCCACAAGATTATTCTGAAACTGAGCCTGAAACCTCACCTAAAAGCAGCAAGAGACAGAAACTTGGCCCCACATCGGCGGAGGAAGCAAACGGTGATGGACAACAGAAAATATCTCATATCACGGTGGAACGCAACCGAAGAAAGCAAATGAATGAGCACTTGTCTGTCTTAAGGTCACTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAATTGAAGGTGTTGTTGATTACATCAACGAGCTACAGCAAGTGCTACAATGCCTTGAGGCCAAGAAACACAGGAAAGTCTACAATGATGTACTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCTTCACCACTAAGTCCAAGAAAACCACCACTTAGCCCTAGAATAATGAACTTACCCATTAGTCCAAGAACTCCACAACCAAGTAGCCCTTACAAACCGAGGTTGCAACAAGGTTACCTTTCCCCTACCATATCAAACTCTGTTGAGCCATCTCCTACTACTTCTTCGGCTTCTTCCATCAATGACAATATCAATGAACTTGTTGCCAATTCCAAATCAGCTATTGCTGATGTGGAGGTCAAGTTTTCAGGCCCAAATGTTCTCTTGAAAACTGTGTCTCCACGAATTCCAGGGCAGGCTACGAGAATAATATCAGCACTTGAAGACCTTGCGCTTGAAATCCTCCATGTCAACATGAGCACAGCTGATGAAACCATGCTAAACTCATTCACCATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTGA 1080 0.4278 MSFSQHFLIPTESFFTEKKNNQTLKAPMDDTLSDIFQDTNFGGDDLFAILESLEDFQDFPPPINNEAFVNTTSRENEQNTTRMVSTTSSSAPQDYSETEPETSPKSSKRQKLGPTSAEEANGDGQQKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIEGVVDYINELQQVLQCLEAKKHRKVYNDVLSPRLVSSPRPSPLSPRKPPLSPRIMNLPISPRTPQPSSPYKPRLQQGYLSPTISNSVEPSPTTSSASSINDNINELVANSKSAIADVEVKFSGPNVLLKTVSPRIPGQATRIISALEDLALEILHVNMSTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02608 359 SMART finulus 131 182 IPR011598 GO:0046983
Seca7g02608 359 PANTHER TRANSCRIPTION FACTOR FAMA 31 358 IPR044283 GO:0003700|GO:0010052
Seca7g02608 359 Gene3D - 117 191 IPR036638 GO:0046983
Seca7g02608 359 MobiDBLite consensus disorder prediction 107 129 - -
Seca7g02608 359 FunFam Transcription factor SPEECHLESS 117 191 - -
Seca7g02608 359 Pfam Helix-loop-helix DNA-binding domain 126 177 IPR011598 GO:0046983
Seca7g02608 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 196 IPR036638 GO:0046983
Seca7g02608 359 MobiDBLite consensus disorder prediction 61 130 - -
Seca7g02608 359 CDD bHLH_AtFAMA_like 128 199 - -
Seca7g02608 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 176 IPR011598 GO:0046983
Seca7g02608 359 MobiDBLite consensus disorder prediction 204 221 - -
Seca7g02608 359 MobiDBLite consensus disorder prediction 198 241 - -
Seca7g02608 359 MobiDBLite consensus disorder prediction 64 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02608 Seca-Chr7 65582184 65585890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02608 36 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.445 1.73e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca7g02608 HLH 3.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02608 K20558 - gmx:100777437 453.751