Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02572 ATGGAACAGAGCATCCCATGTAAATACACTGTGCATCAGTGTGTTACCAAGAAGTTCATGAAAGTAAAGCACAACAGTAACAGTTCCATTCCTAGTGAACCAAGAGTGGTTCGCATATCCGTCACTGATCCCGATGCAACCGACTCTTCCAGCGACGAAGAAGGAGGAGAGTGCTTCCCTCGCCGGAGAATGAAGTGCTATGTCAACCAGATTGACATCGAACCAGCCTGCAAGACTGTCTCCACAACGGCCAAAAAGAGGCCCGCCGGAGACACCGCTTCCTGCCGGCGACCGGCAAAGGTCTCTGCTGACGGAAATGTGAGGAAGTACCGCGGCGTGCGGCAGAGACCTTGGGGAAAATGGGCGGCGGAGATTCGAGATCCGGTGAGCCGCGTCCGCCTCTGGCTCGGCACATTCAACACCGCAGAGGAAGCTGCTATGGTCTATGACGCCGCGGCGATCAGGCTCCGCGGTCCTGACGCTCAGACGAACTTCCTCACGCCTCCGGCGAGGGAGGAGAAGTCGGAGGAACCGGAAGAACCAGAAGTCGTTGCTGGAAAGCCAGAAATCAACGTGGATGTCAAGCCGGTGGCGTCTGGCTCCGGCTATGATTCCGGTGAGGAGTGTCTCAACCTCTCATCTCCCACTTCGGTTCTCCAGTTCAGAAGAGAGGAAATCTGTGAACCGCAGAAACCGGTCGAACCGGTTGAACCAGAAGTTATGTGTGGGAAGGTGGATGCTGAACCGGTTGTGGCTGTGGAAGAGGTGTTTGGAGAGTGTCAAGGTGAAACGAGGCTATTCACTGAAGAGTTTTTCAGTAATGACATGCCGGTATGGAATGATGTGTTCAATTTTTCAACTACCCAAAACTACTCTGTTATGTTTGATGCCCCAGTTTCCAATTTGTTCCATGAAACGACGCCGGTTTTTGTAAGTGAGGGTGGTTTCAGTGATCATAACATAGATTTTGATAAAACATTCTCATCACCATCAACGTTATGCCAAGTGGACGATTACTTCCAAGACATTTTGTTAGGTTCTGATCCTTTGGTGGTGCTCTGA 1062 0.5141 MEQSIPCKYTVHQCVTKKFMKVKHNSNSSIPSEPRVVRISVTDPDATDSSSDEEGGECFPRRRMKCYVNQIDIEPACKTVSTTAKKRPAGDTASCRRPAKVSADGNVRKYRGVRQRPWGKWAAEIRDPVSRVRLWLGTFNTAEEAAMVYDAAAIRLRGPDAQTNFLTPPAREEKSEEPEEPEVVAGKPEINVDVKPVASGSGYDSGEECLNLSSPTSVLQFRREEICEPQKPVEPVEPEVMCGKVDAEPVVAVEEVFGECQGETRLFTEEFFSNDMPVWNDVFNFSTTQNYSVMFDAPVSNLFHETTPVFVSEGGFSDHNIDFDKTFSSPSTLCQVDDYFQDILLGSDPLVVL. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02572 353 CDD AP2 109 165 IPR001471 GO:0003700|GO:0006355
Seca7g02572 353 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
Seca7g02572 353 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Seca7g02572 353 FunFam Ethylene-responsive transcription factor 2 108 167 - -
Seca7g02572 353 SUPERFAMILY DNA-binding domain 109 166 IPR016177 GO:0003677
Seca7g02572 353 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Seca7g02572 353 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Seca7g02572 353 MobiDBLite consensus disorder prediction 81 100 - -
Seca7g02572 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 230 - -
Seca7g02572 353 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Seca7g02572 353 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02572 Seca-Chr7 64422325 64423386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02572 6 352 AP2-EREBP Transcription Factor Family AT4G27950 38.827 2.10e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca7g02572 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02572 - - pcin:129303306 325.865