Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02560 ATGGGCAAGAAGCTGGGACTCTTGTTCATTTACTCAGTAGCCTTCATGATTGGAGCAATGTTATTTGGTGTTAGAGCTGAACCAGTGGAGGATAAAGAAGCATTGCTTGATTTCCTTCACAGCATTGATCACTCTCATCATGTCAACTGGGATAAGAGATCTTCTGTATGCAAAAGCTGGATAGGAGTGACTTGCAACACAGAACATTCCCAAGTTATAGCCCTTCAGCTACCCAGAGCTGGATTGAGTGGTCCAATCCCACCAAACACTCTTAGTCGCCTCTCAGCATTGCAAATTGTGAGTCTTCCATCAAATAGTATAACTGGTTCTTTCCCTCCTGGTTTCTCTGAGCTAAAGAATTTGACCTATCTCTACCTCCAATTTAACAACTTTTCTGGTCCATTGCCATCAGATTTTTCAGTTTGGAATAATCTTGCTGTTGTAAATTTATACAACAATTCTTTTAATGGGAGCATCCCTTCTTCAGTTTCAAATTTGACTCATCTCACTTCTTTAGTCCTAGCAAACAACTCTCTTTCAGGTGAAATTCCTGATCTCAATATTCCTAGCCTGCAAGAGCTAAATTTGGCCAACAATAACCTTAGTGGGGTTGTGCCTAAATCCCTTCAGAGATTCCCAAATTGGGCCTTTTCTGGTAACAATCTTACATCTTCACATGCACTTCCTCCTGCTTTTCTTGCCCCAAGTACTCATTCAAGAAAGAAAACCACAGGACTTAGTGAACCAGCATTGTTGGGTATCATCATTGGAGGTTGTGTGTTGGGACTTGCAGTGGTAGCAGCTTTGGTGATTGTGTGCTGCTATGAGAAACATGGGGAAGATGGACAATCAGTGAAGTCCATGAAAAAAGAAGACTTCTCTGAGAAGAAAGATAATTCTGAAAGTCAAGATAATAACAAAATTGTCTTCTTTGAGGGTTGCAATCTTGCATTTGACCTGGAGGACCTGTTGAGAGCTTCTGCTGAGGTTCTTGGAAAAGGAACATTCGGTACTGTATATAAGGCTGCTCTAGAGGATGCAACAACAGTGGCAGTGAAGAGGTTGAAGGAGGTAACAGTTGGAAAACGCGAGTTTGAACAGCAGATGGAGATGGTGGGGACTATTAGGCATGAAAATGTGGCTGCACTAAGGGCATATTACTATTCAAAAGAGGAGAAACTTATGGTATATGATTACTACGAACAGGGCAGTGTCTCAGCAATGTTGCATGGCAAAAGAGGAGTAGGCAGGATTTCTTTAGACTGGGAAAGCCGTTTGAGAATAGCAATTGGTGCAGCAAGAGGCATTGCTCACATCCATGCTTTACATAGAGGGAAACTCATCCATGGGAACATAAAATCCTCAAACATCTTCCTCAACTCTCAAGGATATGGTTGTCTATCTGATATTGGATTGGCAACATTGATGAGTCCAATGTCCCCACCAGCATTGAGAACTGCAGGATACCGTGCAGTGGAAGTAACAGACCCAAGAAAAGCAACAACAGCATCCGATGTGTACAGTTTTGGGGTCCTGTTACTTGAGCTTCTAACTGGGAAATCTCCAATGCATGCCACAGGAGGTGAAGAGGTTGTCCACTTAGTTAGATGGGTGAATTCTGTTGTTAGAGAGGAATGGACTGCAGAGGTGTTTGATGTAGAGTTACTGAGACATCCAAATATAGAGGAAGAAATGGTTGAGATGCTACAAATAGGGATGGCATGTGTTGTAAGAATACCAGAACAGAGGCCAACAATGACAGAGGTTGTGAGAATGATGGAGGAAATTCGTCGAGTGAATACTGGTAATCGATCTTCCACAGAGTCTAGATCAGGGGGTTCTACTCCAACACCTCGAGCAATTGAGACACCTTCCTATTCTACTTCTCTTCCACATTGA 1899 0.425 MGKKLGLLFIYSVAFMIGAMLFGVRAEPVEDKEALLDFLHSIDHSHHVNWDKRSSVCKSWIGVTCNTEHSQVIALQLPRAGLSGPIPPNTLSRLSALQIVSLPSNSITGSFPPGFSELKNLTYLYLQFNNFSGPLPSDFSVWNNLAVVNLYNNSFNGSIPSSVSNLTHLTSLVLANNSLSGEIPDLNIPSLQELNLANNNLSGVVPKSLQRFPNWAFSGNNLTSSHALPPAFLAPSTHSRKKTTGLSEPALLGIIIGGCVLGLAVVAALVIVCCYEKHGEDGQSVKSMKKEDFSEKKDNSESQDNNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEDATTVAVKRLKEVTVGKREFEQQMEMVGTIRHENVAALRAYYYSKEEKLMVYDYYEQGSVSAMLHGKRGVGRISLDWESRLRIAIGAARGIAHIHALHRGKLIHGNIKSSNIFLNSQGYGCLSDIGLATLMSPMSPPALRTAGYRAVEVTDPRKATTASDVYSFGVLLLELLTGKSPMHATGGEEVVHLVRWVNSVVREEWTAEVFDVELLRHPNIEEEMVEMLQIGMACVVRIPEQRPTMTEVVRMMEEIRRVNTGNRSSTESRSGGSTPTPRAIETPSYSTSLPH. 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02560 632 SUPERFAMILY L domain-like 36 224 - -
Seca7g02560 632 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Seca7g02560 632 MobiDBLite consensus disorder prediction 596 632 - -
Seca7g02560 632 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Seca7g02560 632 ProSiteProfiles Protein kinase domain profile. 325 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02560 632 Gene3D Transferase(Phosphotransferase) domain 1 400 613 - -
Seca7g02560 632 Gene3D Ribonuclease Inhibitor 141 259 IPR032675 -
Seca7g02560 632 SUPERFAMILY Protein kinase-like (PK-like) 329 594 IPR011009 -
Seca7g02560 632 PANTHER OS05G0588300 PROTEIN 12 606 - -
Seca7g02560 632 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Seca7g02560 632 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 607 - -
Seca7g02560 632 MobiDBLite consensus disorder prediction 599 632 - -
Seca7g02560 632 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Seca7g02560 632 FunFam pollen receptor-like kinase 1 294 399 - -
Seca7g02560 632 Gene3D Ribonuclease Inhibitor 30 140 IPR032675 -
Seca7g02560 632 Pfam Protein kinase domain 328 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02560 632 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02560 Seca-Chr7 64068427 64072417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02560 20 607 Receptor kinase-like Gene Family AT4G23740 57.807 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca7g02560 Pkinase 6.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02560 - - aprc:113851984 941.414