Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02493 ATGCCATCTTGGTGGACAAGAAAGTCTAAAGTAGTTGCACAAGAAGATAACTATATACAACAAGAAGAAAAGCAGAAGGGCAGGAACAAAGATTGTAAAAGCAATGCTTCAAAAACCAGTGCTAGAACAAACAAGAGGAAGCAAAACATAGAGAAAGCAAAAAGCTTTGAAGAATCTGTCTTAGTTTCTTACAGATTTTCTAAAGCAAGTTTTAAAGCTTCTCCCATTCCAGGTAATGGACCTTTCCATTCAGAGAAGCAGGTATATCCTCTGCCTAGGCCATCAAGGTCACTGGATCTTCAATCAGTGAAACTTGATCAGAAGGGTGTGGTGTTTTGTTCAGAACCAACATCAAGTTCAAGCTCTCCTTCATCACGGTCTTCAACTTCAACTTCTTTGGGTGGAGATCATAAAGATTCTTCTGGCTTTTCCATAGAATTTGAAGAAACTGAATGTGACTCTGGCTTGAGAATTCAACATCAAAGATCAGAACTAGCCTCTAAAGCAGAAACGTTTCCACAGCTTTGGGAAACTAGTAATGAGCGCCAAACCATAAATGATGGAAATTGGAAGCACTTATGTCATCCTCTGCCTCTTCCTCCTAATTATTCTAATGGATTATCACAGCATCTTCAATCAAAATGGATCAAGGGAAGGCTTCTGGGAAGAGGGTCATTTGGCCATGTCTATGCTGGACTGAATAGCACAAATGGCCAGCTGTGTGCAATTAAGGAAATAACATCTATCTGTGAGGATCAGAACTCTGAAGGTTATCTCAAAGAGATAAATCAGGAGGTAGCAGTACTAAGCCAGCTTTCACATCGAAACATTGTCCAATACTATGGAAGCGAACTGGGGAAAGGCAAGCTCTCTCTATATCTAGAGTATGTCTCAGGTGGATCAATTCACAAATTGCTTCAGGATTATGGCCCTTTCAAGGAACCTCTTATTAGAAGTTACACAAGGCAGATTCTTCATGCCCTGGCTTACTTGCATGCAAGAAATATTGTGCACAGGGATATCAAGGGAACAAACATACTAGTAGATCCTAATGGAAAAATCAAGCTTGCTGATTTTGGCTTGGCTAAACATGTATGTAACTTACAAAAGCTTCATACTAAGACCTAG 1128 0.3989 MPSWWTRKSKVVAQEDNYIQQEEKQKGRNKDCKSNASKTSARTNKRKQNIEKAKSFEESVLVSYRFSKASFKASPIPGNGPFHSEKQVYPLPRPSRSLDLQSVKLDQKGVVFCSEPTSSSSSPSSRSSTSTSLGGDHKDSSGFSIEFEETECDSGLRIQHQRSELASKAETFPQLWETSNERQTINDGNWKHLCHPLPLPPNYSNGLSQHLQSKWIKGRLLGRGSFGHVYAGLNSTNGQLCAIKEITSICEDQNSEGYLKEINQEVAVLSQLSHRNIVQYYGSELGKGKLSLYLEYVSGGSIHKLLQDYGPFKEPLIRSYTRQILHALAYLHARNIVHRDIKGTNILVDPNGKIKLADFGLAKHVCNLQKLHTKT. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02493 375 MobiDBLite consensus disorder prediction 114 140 - -
Seca7g02493 375 SMART serkin_6 215 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02493 375 ProSitePatterns Protein kinases ATP-binding region signature. 221 244 IPR017441 GO:0005524
Seca7g02493 375 MobiDBLite consensus disorder prediction 114 138 - -
Seca7g02493 375 MobiDBLite consensus disorder prediction 72 94 - -
Seca7g02493 375 MobiDBLite consensus disorder prediction 15 52 - -
Seca7g02493 375 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 26 367 - -
Seca7g02493 375 MobiDBLite consensus disorder prediction 17 35 - -
Seca7g02493 375 ProSiteProfiles Protein kinase domain profile. 215 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02493 375 Pfam Protein kinase domain 217 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca7g02493 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Seca7g02493 375 Gene3D Transferase(Phosphotransferase) domain 1 212 375 - -
Seca7g02493 375 SUPERFAMILY Protein kinase-like (PK-like) 193 368 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02493 Seca-Chr7 61118517 61122355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02493 213 371 MAP Kinase Kinase Kinase AT1G53570 66.038 1.75e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca7g02493 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02493 K04421 - qsu:111984336 308.145