Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02492 ATGTCGAGGACGCTGGTGCAGCCCATAGGGCAGAAGAGGCTAACCAATGTGGCTGTTGTCCGTCTTAAAAAGCACGGCATGCGCTTCGAGATCGCCTGCTACCCAAACACTGTCCTTTCTTGGCGTTCTGGCGTGGAGAAGGACTTGGATGAAGTGTTGCAATCTCACACAGTTTATTCCAATGTTTCCAAAGGGGTTCTTGCCAAGTCAAAGGAACTGATTGCAGCTTTTGGCACCGATGACCACTCCAAGATATGCTTAGAGATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGCAAAGAGAGGGAGTCGATGCTGGCGAGTCAGTTCCGGGACATTGCCACCATTGTGATGCACAAGACTTACAATCCCGAGACTCAGCGTCCTTACACCATCAGCATGATTGAACGTCTCATGAGGGAAATCCATTTTGCTGTTGATCCAAACAGCACCTCCAAGAAACAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTTCCCTATAAAACGGTGTCCGTTGAGAATACGAGCTGCTGCTCCTGAGGAGCAAGTATCTGCCCTTTTAGAGAAGCTGAGTGAGTGGAAGGCAACCGTTGTTTCTAAAGAAGGATCTGCTGCTCAGATATCTGTTGTTTTTGAATTGGAACCTGGTCTATACAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCACATTCTCTTTACGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATGCCTGCACCAATTCCCAAAGAAACCCGTGAATCTGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCATCTACGAGTAGACCTGCTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACATGTAATGTTTCTTTTGAAGATGCTAAGCTTTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGAAAGACGATGCAACTCCCACCACTTACAGAAGAAGAATGCATGGCAGATATGGAATTGGGTGACTCAAACTCTGATTTGAAGGATTATTCATTTTGA 1080 0.4519 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKELIAAFGTDDHSKICLEILKKGELQVAGKERESMLASQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPNSTSKKQALELIQELQKHFPIKRCPLRIRAAAPEEQVSALLEKLSEWKATVVSKEGSAAQISVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVEGDTQVEQYNDYEDMPAPIPKETRESVLELNDKLQKQTISSTSRPAEGQQPKQNKCNTCNVSFEDAKLYREHHKSEWHKHNMKRKTMQLPPLTEEECMADMELGDSNSDLKDYSF. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02492 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Seca7g02492 359 Gene3D - 1 96 IPR036786 -
Seca7g02492 359 Gene3D - 174 251 - -
Seca7g02492 359 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Seca7g02492 359 SUPERFAMILY beta-beta-alpha zinc fingers 287 330 IPR036236 -
Seca7g02492 359 FunFam SBDS, ribosome maturation factor 100 172 - -
Seca7g02492 359 Gene3D Classic Zinc Finger 289 348 - -
Seca7g02492 359 FunFam SBDS, ribosome maturation factor 3 96 - -
Seca7g02492 359 Gene3D - 100 172 IPR037188 -
Seca7g02492 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 247 IPR039100 -
Seca7g02492 359 NCBIfam ribosome assembly factor SBDS 13 232 IPR002140 GO:0042256
Seca7g02492 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Seca7g02492 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Seca7g02492 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Seca7g02492 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Seca7g02492 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02492 Seca-Chr7 61099112 61101695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02492 27 359 C2H2 Transcription Factor Family AT1G43860 58.261 6.85e-143 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca7g02492 SBDS_C 3.2e-27 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02492 K14574 - gmx:100797497 660.603