Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02485 ATGGAGGATTCTTCAGCTGGTGAGGACAACAAGACTTGTCCACGTGGTCACTGGAGGCCTGCTGAGGATGAAAAGCTTCGCCAACTTGTTGAACAATTTGGTGCCCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCGAGAATCAACAGAAGGCCATTCACAGAAGAAGAAGAAGGGAGACTACTTGCAGCTCACCGCATTCATGGCAACAAATGGGCACTCATAGCGAGGCTCTTCCCTGGTCGAACTGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCAAGAAAGCAAAGGGAGCAATCCAAGAAGAGAAGCTTCCATGACCTCTATTCCAACAACACTACTTCCTCTTCTTCTAATAATAATAACAATATTATTATTAGTTTTCCCCATAAACCTCCTCATGAACTACTATTTAGCTCATCATCAAGAATTGGGTTAGAGAATGCAAGATTCTTTGACTTCAGGAGCCTCTACAATAAAGAAAGGACGACAACAACAACAATTGCAGCAAATTCTCCTAATTCCAATAATAATGTTTACCTTTCAGAAAGCTCAAAAGCCTCAGATAGGTTTCTTCACAGAATTTACCCAAATCCTTCAATATCCTTCGGAGGCTTTGGAGGTTCCAACATGTTCTCGATTCCCAACTGTAGTAGGGTTGTTGTTCCTAGCAATTTTGGATGCCTTGATTATGCTAATGATGGAAGGCTGAAAAGGGAGTTGGTGAGTTTCTGTGACAACTCATCCACATTGACCAAGTTGGGAGGTTCTAATTCTACTGAACAAGAGGAAACAGATGAGTCGTCCAATGATATTGAAAGGAGTGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATGA 933 0.4148 MEDSSAGEDNKTCPRGHWRPAEDEKLRQLVEQFGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEGRLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKKRSFHDLYSNNTTSSSSNNNNNIIISFPHKPPHELLFSSSSRIGLENARFFDFRSLYNKERTTTTTIAANSPNSNNNVYLSESSKASDRFLHRIYPNPSISFGGFGGSNMFSIPNCSRVVVPSNFGCLDYANDGRLKRELVSFCDNSSTLTKLGGSNSTEQEETDESSNDIERSEVPFIDFLGVGVSSS. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02485 310 PANTHER MYB PROTEIN-RELATED 15 143 - -
Seca7g02485 310 CDD SANT 18 59 IPR001005 -
Seca7g02485 310 FunFam MYB transcription factor 68 142 - -
Seca7g02485 310 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Seca7g02485 310 FunFam MYB transcription factor 15 66 - -
Seca7g02485 310 Gene3D - 69 130 - -
Seca7g02485 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca7g02485 310 Gene3D - 15 66 - -
Seca7g02485 310 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca7g02485 310 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Seca7g02485 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Seca7g02485 310 SMART sant 66 114 IPR001005 -
Seca7g02485 310 SMART sant 14 63 IPR001005 -
Seca7g02485 310 Pfam Myb-like DNA-binding domain 18 78 - -
Seca7g02485 310 CDD SANT 69 109 IPR001005 -
Seca7g02485 310 MobiDBLite consensus disorder prediction 273 293 - -
Seca7g02485 310 MobiDBLite consensus disorder prediction 115 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02485 Seca-Chr7 60892265 60894173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02485 13 310 MYB Transcription Factor Family AT1G17950 43.289 5.57e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca7g02485 Myb_DNA-bind_6 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02485 K09422 - gmx:100817328 354.369