LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca7g02419	ATGGGACTCATCAAGAGCACGCACAAGCAACTGGCCTTGGCACTGGTGATGATTGCATTAGCAAGCGTAGGAGCAGCTACTACCACTGCTGATCAAGCCCTGCCCGGCTGCGAAAGCAAATGTGGAAATGTTTCAATTCCATATCCATTTGGCATAGGCGTATCAATTGTCACCGGTCAAAACTGTTTCCTGCAGAAAAAAATGCAACTCAGATGCGATAAATCCATTTTGTATCGCGGAAATGGCAACGTCCAAATTTTGAACATAACCCTCGCAGGTAAAATGGAGATGCTTGCTAGCATCTCCAAGGTTTGCATAAACGGCTCGGATATAACAGAAAATCCATTCAACCTGAGAACTCCGGCTTTCGCGATTTCTAGGGAAGATAACAAATTCGTGAGTGTAGGCTGTGACACTTACGGCTATCTCAGTAATTTTCGCGACGATAAGACGTACACAACCGGATGCTTAACAAGATGTGCCAGCTATGATGACATGAAAACTATGCAATTGGCCATGGACGGAAACTGTACGGGGATTGGGTGTTGCCAGGTGGATATTCCTCCCGCAATGAAGAATATTAGCACACGAGCATATACCTTTAACAATTTCACAAACTCTTGGGGTTTCAACAACTGCAGTTATTCCTTTGTTGTCAAAAACGGCGGTTATAATTTTTCTCTGAGTCATCTAGTGGATGGTCTCCCATTCGAGAAGGTTCCCTTTGTTGTTGATTGGAGTATTAGAGGCCTGACTTGTGAAAATTACCCGCAGAGAGGAGACTATGCATGCAAGGCTAATAGCGAATGTCAGAATTGGACCACTGGATCTGGTTATCGATGCAAATGTAAGGAGGGTTTTGAGGGGAACCCATACCATCCGGATGGTTGTCGAGATATTCAAGAATGTAAGAGTGGTGGTCATAATCACGATTGCATAAGTGATAGTCACTGTGAAGAAATCGAAGGGTCTTTCAAATGTTTTTGTCCTGTTGGGCAAATTGGAGATGAAAAAAGGGGAGGTGCAGGAGAAGGATGCCGACGAAAGCCCAAAGAAGATGTAGTTACAAGGGTTACCATTGGTGCAGCTGCAGGACTTGTGGCTTTGTTTGTGGGGATTTCTTGGCTATACTTGATATACCAGAAAAGAAAACTCATCAAATTAAAGGAAAAGTTCTTTCGACAAAATGGTGGTATAATTTTGCAACAACAACTCTCTACAATCGAGGATTCCTCTCAGACTACTAAAATGTTCACAGCAGAGCAACTTAAGAAGGCCACCAACAATTATGATGAAAGCTTAATCATCGGTAAAGGAGGTTTTGGTACAGTTTTCAAAGGCATTCTATCAGATAATAGGATTGTTGCTATCAAGAAATCCAAAGTAGTGGATCAGAGCCAAATTGAGCAATTCATAAATGAGGTGATTGTACTATCCCAAATTAACCATAGGAACGTGGTCAAACTCTTGGGTTGTTGTTTGGAGACAGAAGTACCTTTACTAGTTTATGAATTTGTTAACAAGGGCACCCTTTTTGATTATATACACAATGAAGGCAAGGTGAGTAATGTATCTTGGGAAACACGTTTAAGGATAGCAACAGAGGCAGCAGGAGCTTTATCTTACTTACACTCAGCTGCCTCCATACCCATTATCCACAGAGATGTGAAGAGTACAAACATTCTCTTAGATGACAATCTCATTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACAGAACTAGCGACAATGGTGCAAGGAACCCTTGGTTACCTGGATCCAGAGTACATGCTAACAAGCCAACTCACTGTGAAAAGTGATGTGTATAGCTTTGGAGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAAATCTCTTTCTTTTGATAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCACTTTCTATCTTGCTTGAAAGAGGATCGCATGTTTGATGTTCTTCAAGATGGCATTTTGAATGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTGTTCTTGCAGCAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGTTAATGAAGAAGCACCCATGGATCAATACAGATCAAAATTTGGAGGAGACCCAATACTTGCTTCATGGGGCATCTAGCATTCAAGACCATGGTGATAGTAGTAACTACCAAAGTACTATGTATGATAGCTTGAGAGATCATGCACTAATTGCCTTCGATGATGGAAGATGA	2283	0.4214	MGLIKSTHKQLALALVMIALASVGAATTTADQALPGCESKCGNVSIPYPFGIGVSIVTGQNCFLQKKMQLRCDKSILYRGNGNVQILNITLAGKMEMLASISKVCINGSDITENPFNLRTPAFAISREDNKFVSVGCDTYGYLSNFRDDKTYTTGCLTRCASYDDMKTMQLAMDGNCTGIGCCQVDIPPAMKNISTRAYTFNNFTNSWGFNNCSYSFVVKNGGYNFSLSHLVDGLPFEKVPFVVDWSIRGLTCENYPQRGDYACKANSECQNWTTGSGYRCKCKEGFEGNPYHPDGCRDIQECKSGGHNHDCISDSHCEEIEGSFKCFCPVGQIGDEKRGGAGEGCRRKPKEDVVTRVTIGAAAGLVALFVGISWLYLIYQKRKLIKLKEKFFRQNGGIILQQQLSTIEDSSQTTKMFTAEQLKKATNNYDESLIIGKGGFGTVFKGILSDNRIVAIKKSKVVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVNKGTLFDYIHNEGKVSNVSWETRLRIATEAAGALSYLHSAASIPIIHRDVKSTNILLDDNLIAKVSDFGASRLVPLDQTELATMVQGTLGYLDPEYMLTSQLTVKSDVYSFGVVLVELLTGEKSLSFDRPEEKRSLAMHFLSCLKEDRMFDVLQDGILNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGIRLMKKHPWINTDQNLEETQYLLHGASSIQDHGDSSNYQSTMYDSLRDHALIAFDDGR.	761

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca7g02419	760	CDD	STKc_IRAK	436	703	-	-
	Seca7g02419	760	CDD	EGF_CA	299	336	-	-
	Seca7g02419	760	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	26	713	IPR045274	GO:0007166
	Seca7g02419	760	SUPERFAMILY	Protein kinase-like (PK-like)	410	701	IPR011009	-
	Seca7g02419	760	SMART	serkin_6	430	712	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g02419	760	ProSiteProfiles	Protein kinase domain profile.	430	712	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g02419	760	Pfam	Wall-associated receptor kinase galacturonan-binding	37	93	IPR025287	GO:0030247
	Seca7g02419	760	SMART	egf_5	302	347	IPR000742	-
	Seca7g02419	760	SMART	egf_5	252	298	IPR000742	-
	Seca7g02419	760	Pfam	Calcium-binding EGF domain	299	332	IPR001881	GO:0005509
	Seca7g02419	760	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	551	563	IPR008271	GO:0004672\|GO:0006468
	Seca7g02419	760	FunFam	Wall-associated receptor kinase 2	400	505	-	-
	Seca7g02419	760	Gene3D	Laminin	252	340	-	-
	Seca7g02419	760	Gene3D	Transferase(Phosphotransferase) domain 1	506	724	-	-
	Seca7g02419	760	Gene3D	Phosphorylase Kinase; domain 1	396	505	-	-
	Seca7g02419	760	Pfam	Protein kinase domain	432	696	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca7g02419	760	FunFam	Wall-associated receptor kinase 2	506	723	-	-
	Seca7g02419	760	ProSitePatterns	Protein kinases ATP-binding region signature.	436	459	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca7g02419	Seca-Chr7	58804715	58809428	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca7g02419	32	760	Receptor kinase-like Gene Family	AT1G21230	46.549	0.0	621

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Seca7g02419		Pkinase	1.4e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca7g02419	-		-	gmx:100819535	1048.88