Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca7g02406 ATGGAAACTGAGGATGGAACTAGCAATACTGATATTGCTGAAAATGCTGATCTGGATCCTTGTTTGAATGCTGAAGCTGTAAATAGTGGAGTCACAATTGAAGATGGGACTGATGTTGCTGAATGTGGAGAAGTTCAGGGCTTGAGGAAGGAAGATGTAAATGATGGGGTGGCGATTGCTGATGGGAATGGTGTTGCTGAAGATGGAGATGTTCAGGGCTTGGAGAATGAAGCTGAGAATAATGGGTTGGCAATTGCTTATGAAAATGGTGTTGTTGAAGTTGGAGAAGATTGTGGGTTGAAGAATGAAGCTGTGAATAATGGGTTGGCAATTGCTTATGAAAATGGTGTTGTTGAAGGTGGAGAAGATTGTGGGTTGAAGAATGAAGCTGTGAATAATGCGGTGGCAATTGCTGATGGGAATGGTGTTACTGAAGGTCGACAAGGTGAGGGATTGAAGAGCGAAGCTGTACATAATGGGGTGGTAATCGCTGATAATGGGAATGGTGTTGCTGAAGGTGAAGAGGCTCAGTGCTTGAAGAATGAAACTGTAGATAATGGAGTGGCCATTGCAGATGGATTTGGTGTTGCTGAAGGGGACTCTGGTGCAGTTGAATGTTTTCGAACTTATAAGAGGCGCAAGTATGTAAAGTCAAATTCTGAAAGTAAAGTTCAGGATGGCAGCAGAGAATGTGTGGAAGCTGCAAGTCGCTTGTCAGACCAGGCTGTGAAGAAACCATGTGATTTAGCTGTAGGCCATACTTCAAATAATTATTCACATGGACATTGGGGAAATGTTGTACTAAAGCATTTCTATCATTCATTAGGCAATGACAATGGTGGCATGGAGAGGTGCATGAGGGAAGCACTCATGAATCGTCCTAAAATTAGTTTTGCCACAACAGTTACGGAAACTTTCAAAATTGACAATGGTGAAGAATGCTCTTCACAATTTGAGTTGTTGTCTCGTAGATTACAGAGTGAAGCGAATGGGCATACAGATGTCATGTGCAATGGATTTTATAGTAAACCAGATGACCGAAGTGCAACTGAGAGGTGTCAGCATGTGTTCTGTAGTATCTTAGCCTCCGAAAAGTTCAGTTCATTATGTAAATTGCTACTTGAAAATTTCCAAGGAATGAAACCTGAAAGTGTATTTGACTTTAACGTCATAAACTCAAGGTTGAAAGAACAAGCTTATGAACAATCACCTACACTTTTCTTGTCAGATATTCAACAGGTTTGGAGAAAGCTTCAGAACACTGGAAACGAGATTATTGCTATTGCTAAGAGTCTCTCCAACTTGTCAAAAGCTTCTTACTACGAGCAGGTAAACAGGGTTCATCACTTCTCATTTGAAGATGAAAAGAATTTGTTCCATAACCAGGAATTCAACTCTCCCATGAAACCAGAGCAGACAGAGGAATGTGCTACATATAAAATTTGTACTTGCAAGCATTGTGGTGACAAAGCAGATGGGACAGACTGTTTGGTCTGTGATTCATGCGAGGAGATGTATCATGTGTCCTGTATTGAGCCTGCTGTGAAAGAAATATCCCACAAAATCTGGTTCTGTGCCAATTGTACCGCTAGTGGAATTGGATCTCGACATGAGAATTGTGTGGTTTGTGAAAGGTTGAATGTCCCAAAGACCCTGAACAACATTGTTGGTGAGGAAAGCATCCCTACAAATGAAGAAACGTTAAATGAATTGGATGAGTATTCAAATTGTACTCATGATGGGATTGAAGTTTCCATAGGTGGAAGAAACTCATCTGACTGCAAAATTTGTGGACAGGAGGTGAATGGTGAAAAAGTAAAAATCTGTGGTCACTCTTTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAATCAGATTAAATCATATGGTCACTGTTGGTACTGTCCATCTTGTTTATGCCAAGTTTGCTTCACTGATCGAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATCTTTTGCATGAAACCTCCACAAAATTCTATTCCAAGAGGGAAATGGTTCTGCAGAAAATGTGATGCAGGGATCCAAGCAATACGCCGGGCAAAAATGGCCTATGAGAGTAACAAATGGAGAGCTGGTGAAAATGTTTCAAATCTAAATGATGATATCGATAAGAAATGGAACAATACAGAAGGGCAAGAATTGGACAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCCAACACTCTGAATTTTGAAGAGAACTTAGCTACAGTACAGATTGACTCACAGAGAACATGA 2292 0.4058 METEDGTSNTDIAENADLDPCLNAEAVNSGVTIEDGTDVAECGEVQGLRKEDVNDGVAIADGNGVAEDGDVQGLENEAENNGLAIAYENGVVEVGEDCGLKNEAVNNGLAIAYENGVVEGGEDCGLKNEAVNNAVAIADGNGVTEGRQGEGLKSEAVHNGVVIADNGNGVAEGEEAQCLKNETVDNGVAIADGFGVAEGDSGAVECFRTYKRRKYVKSNSESKVQDGSRECVEAASRLSDQAVKKPCDLAVGHTSNNYSHGHWGNVVLKHFYHSLGNDNGGMERCMREALMNRPKISFATTVTETFKIDNGEECSSQFELLSRRLQSEANGHTDVMCNGFYSKPDDRSATERCQHVFCSILASEKFSSLCKLLLENFQGMKPESVFDFNVINSRLKEQAYEQSPTLFLSDIQQVWRKLQNTGNEIIAIAKSLSNLSKASYYEQVNRVHHFSFEDEKNLFHNQEFNSPMKPEQTEECATYKICTCKHCGDKADGTDCLVCDSCEEMYHVSCIEPAVKEISHKIWFCANCTASGIGSRHENCVVCERLNVPKTLNNIVGEESIPTNEETLNELDEYSNCTHDGIEVSIGGRNSSDCKICGQEVNGEKVKICGHSFCPSKYYHVRCLSSNQIKSYGHCWYCPSCLCQVCFTDRDDDKIVLCDGCDHAYHIFCMKPPQNSIPRGKWFCRKCDAGIQAIRRAKMAYESNKWRAGENVSNLNDDIDKKWNNTEGQELDKVGGMDMLLTAANTLNFEENLATVQIDSQRT. 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca7g02406 763 ProSiteProfiles Zinc finger PHD-type profile. 481 531 IPR019787 -
Seca7g02406 763 SMART PHD_3 645 688 IPR001965 -
Seca7g02406 763 SMART PHD_3 593 642 IPR001965 -
Seca7g02406 763 SMART PHD_3 483 529 IPR001965 -
Seca7g02406 763 Pfam PHD-finger 643 688 IPR019787 -
Seca7g02406 763 SUPERFAMILY FYVE/PHD zinc finger 642 693 IPR011011 -
Seca7g02406 763 Gene3D - 372 531 - -
Seca7g02406 763 PANTHER OS02G0192300 PROTEIN 469 573 - -
Seca7g02406 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 693 IPR013083 -
Seca7g02406 763 ProSiteProfiles Zinc finger RING-type profile. 594 641 IPR001841 -
Seca7g02406 763 ProSiteProfiles Zinc finger PHD-type profile. 640 690 IPR019787 -
Seca7g02406 763 FunFam PHD finger protein EHD3 isoform A 371 532 - -
Seca7g02406 763 SUPERFAMILY FYVE/PHD zinc finger 469 529 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca7g02406 Seca-Chr7 57954627 57965357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca7g02406 642 705 C2H2 Transcription Factor Family AT3G01460 46.875 7.91e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca7g02406 PHD 1.2e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca7g02406 - - gmx:100810450 1006.9